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3288 | class Menu(Enum):
"""Enumeration of all Multiwfn menu functions.
Sequences represent the keystrokes to navigate Multiwfn
interactively. Each entry can be run standalone or composed
sequentially via job.add_menu().
Key conventions:
- "0" -> return to main menu (from most submenus, but not all --
see each entry's own Sequence breakdown)
- "-1" -> trigger search-all or global option within a submenu
- "n" -> decline a fragment/mirror-plane restriction prompt
- "q" -> quit / return without change
- "h" / "l" -> select the HOMO / LUMO at an orbital-index prompt
- "a" -> select all orbitals
"""
@classmethod
def search(cls, query: str) -> list["Menu"]:
"""Search menu items by name (case-insensitive)."""
query_upper = query.upper()
return [item for item in cls if query_upper in item.name]
@classmethod
def list_all(cls) -> list[str]:
"""Return names of all menu items."""
return [item.name for item in cls]
def get_sequence(self) -> tuple[str, ...]:
return self.value
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 0: Show molecular structure / view orbitals
# ─────────────────────────────────────────────────────────────────────────
# Display 3D molecular structure and orbital isosurfaces in the GUI;
# prints atom coordinates to screen
# Sequence: 0=Show molecular structure and view orbitals
VIEW_STRUCTURE = ("0",)
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 1: Output all properties at a point
# ─────────────────────────────────────────────────────────────────────────
# Interactive only – prompts for a coordinate or atom index then
# prints all supported real-space functions at that point (rho, ESP,
# ELF, ...). INTERACTIVE ONLY - Ignore for now, output will not be
# parsed corectly or output expected results Print every real-space
# function value (rho, ESP, ELF, G, K, ...) at a user-supplied
# coordinate or nucleus Requires xyz input and user interaction,
# ignore for now
# Sequence: 1=Output all properties at a point
PROPERTIES_AT_POINT = ("1",)
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 2: Topology analysis
# ─────────────────────────────────────────────────────────────────────────
# Uses Newton iteration to locate critical points (CPs) of a chosen
# real-space function, then traces gradient paths between them. CP
# types: (3,-3) nuclear/max, (3,-1) bond, (3,+1) ring, (3,+3) cage.
# Sequence: 2=Topology analysis; 0=Print and visualize all generated
# CPs, paths and interbasin surfaces
TOPOLOGY_VISUALISE_CPS = ("2", "0")
# Sequence: 2=Topology analysis; 2=Search CPs from nuclear positions
TOPOLOGY_CP_NUCLEAR_POSITION = ("2", "2")
# Sequence: 2=Topology analysis; 3=Search CPs from midpoint of atomic
# pairs
TOPOLOGY_CP_MIDPOINTS = ("2", "3")
# Sequence: 2=Topology analysis; 4=Search CPs from triangle center of
# three atoms
TOPOLOGY_CP_TRIANGLE_CENTRES = ("2", "4")
# Sequence: 2=Topology analysis; 5=Search CPs from pyramid center of
# four atoms
TOPOLOGY_CP_PYRAMID_CENTRES = ("2", "5")
# Sequence: 2=Topology analysis; 6=Search CPs from a batch of points
# within sphere(s); 0=Start the search using the defined
# sphere center
TOPOLOGY_CP_SPHERE_POINTS = ("2", "6", "0")
# Outputs CPout.txt
# Sequence: 2=Topology analysis; 7=Show real space function values at
# specific CP or all CPs; 0=output properties of ALL CPs to
# CPprop.txt (not just one)
TOPOLOGY_CP_REAL_SPACE_POINTS = ("2", "7", "0")
# Sequence: 2=Topology analysis; 2=Search CPs from nuclear positions;
# 3=Search CPs from midpoint of atomic pairs; 8=Generating
# the paths connecting (3,-3) and (3,-1) CPs
TOPOLOGY_CP_PATHS_3MINUS3_3MINUS1 = ("2", "2", "3", "8")
# Sequence: 2=Topology analysis; 2=Search CPs from nuclear positions;
# 3=Search CPs from midpoint of atomic pairs; 9=Generating
# the paths connecting (3,+1) and (3,+3) CPs
TOPOLOGY_CP_PATHS_3PLUS1_3PLUS3 = ("2", "2", "3", "9")
# Search ALL critical points of rho starting from every nuclear
# position; finds NCPs, BCPs, RCPs, and CCPs in one pass
# Sequence: 2=Topology analysis; 2=Search CPs from nuclear positions;
# 3=Search CPs from midpoint of atomic pairs; 8=Generating
# the paths connecting (3,-3) and (3,-1) CPs; 0=Print and
# visualize all generated CPs/paths/surfaces; -10=Return to
# main menu
TOPOLOGY_SEARCH_CPS = ("2", "2", "3", "8", "0", "-10")
# Full AIM workflow in one sequence: search all CPs, generate bond
# paths, then generate interbasin surfaces
# Sequence: 2=Topology analysis; 2=Search CPs from nuclear positions;
# -1=Set CP searching parameters; 3=Criteria for gradient
# norm convergence: 1.00000E-06; 4=criteria for displacement
# convergence
TOPOLOGY_ANALYSIS_COMPLETE = ("2", "2", "-1", "3", "4")
# Topology analysis of the electrostatic potential (ESP): locate ESP
# critical points starting from all nuclei
# Sequence: 2=Topology analysis; -2=Set path generating parameters;
# 2=select the 'Stepsize' setting; -1=value given for the
# stepsize prompt
TOPOLOGY_ESP_ANALYSIS = ("2", "-2", "2", "-1")
# Topology analysis of the Localized Orbital Locator (LOL): find LOL
# maxima corresponding to bonding and lone-pair basins
# Sequence: 2=Topology analysis; -10=Return to main menu; 2=re-enter
# Topology analysis (from the main menu); -1=Set CP
# searching parameters
TOPOLOGY_LOL_ANALYSIS = ("2", "-10", "2", "-1")
# Topology analysis of the Electron Localization Function (ELF): find
# ELF attractors and characterise bonding basins
# Sequence: 2=Topology analysis; 9=Generating the paths connecting
# (3,+1) and (3,+3) CPs; 2=search CPs from nuclear positions
# (active function, default rho); -1=Set CP searching
# parameters
TOPOLOGY_ELF_ANALYSIS = ("2", "9", "2", "-1")
# Topology analysis of nabla^2 rho: locate charge-concentration (3,-3)
# and charge-depletion (3,+3) critical points
# Sequence: 2=Topology analysis; 3=Search CPs from midpoint of atomic
# pairs; 2=search CPs from nuclear positions (active
# function, default rho); -1=Set CP searching parameters
TOPOLOGY_LAPLACIAN_ANALYSIS = ("2", "3", "2", "-1")
# Search for bond critical points (BCPs) using atom-pair midpoints as
# Newton starting guesses
# Sequence: 2=Topology analysis; 3=Search CPs from midpoint of atomic
# pairs; -1=Set CP searching parameters
TOPOLOGY_SEARCH_BCP = ("2", "3", "-1")
# Search for ring critical points (RCPs) using triangle centres of
# atom triplets as starting guesses
# Sequence: 2=Topology analysis; 4=Search CPs from triangle center of
# three atoms; -1=Set CP searching parameters
TOPOLOGY_SEARCH_RCP = ("2", "4", "-1")
# Search for cage critical points (CCPs) using pyramid centres of atom
# quartets as starting guesses
# Sequence: 2=Topology analysis; 5=Search CPs from pyramid center of
# four atoms; -1=Set CP searching parameters
TOPOLOGY_SEARCH_CCP = ("2", "5", "-1")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 3: Output / plot property along a line
# ─────────────────────────────────────────────────────────────────────────
# Evaluates a real-space function at 3000 points between two atoms or
# coordinates and produces a curve map (line.txt exported on request).
# or output expected results Plot total electrostatic potential (ESP)
# along a line; reveals electrophilic and nucleophilic interaction
# sites between atoms
# Sequence: 3=Output and plot specific property in a line; 12=Total
# electrostatic potential (ESP); 1,2=define the line by
# atom indices 1 and 2 (universal, molecule-independent
# default); 0=return to the previous menu after plotting
# FIXED - was ("3", "12") alone, which only opens the "input index of
# two atoms" sub-prompt for defining the line and never actually
# evaluates/plots the property.
LINE_ESP = ("3", "12", "1", "1,2", "0")
# Plot electron density rho(r) along a line; shows charge accumulation
# and depletion between bonded atoms
# Sequence: 3=Output and plot specific property in a line; 1=Electron
# density (rho); 1=select atom-index mode to define the line; 1,2=atom indices 1 and 2
# (universal, molecule-independent default); 0=return to the
# previous menu after plotting
# FIXED - was ("3", "1") alone, which only opens the "input index of
# two atoms" sub-prompt for defining the line and never actually
# evaluates/plots the property.
LINE_ELECTRON_DENSITY = ("3", "1", "1", "1,2", "0")
# Plot Laplacian of electron density nabla^2 rho along a line;
# negative regions indicate charge concentration (covalent bonds, lone
# pairs)
# Sequence: 3=Output and plot specific property in a line; 3=Laplacian
# of rho; 1=select atom-index mode to define the line; 1,2=atom indices 1 and 2
# (universal, molecule-independent default); 0=return to the
# previous menu after plotting
# FIXED - was ("3", "3") alone, which only opens the "input index of
# two atoms" sub-prompt for defining the line and never actually
# evaluates/plots the property.
LINE_LAPLACIAN = ("3", "3", "1", "1,2", "0")
# Plot Electron Localization Function (ELF, range 0-1) along a line;
# peaks identify bonding pairs and lone pairs
# Sequence: 3=Output and plot specific property in a line; 9=Electron
# localization function (ELF); 1=select atom-index mode to define the line; 1,2=atom
# indices 1 and 2 (universal, molecule-independent default); 0=return to the
# previous menu after plotting
# FIXED - was ("3", "9") alone, which only opens the "input index of
# two atoms" sub-prompt for defining the line and never actually
# evaluates/plots the property.
LINE_ELF = ("3", "9", "1", "1,2", "0")
# Plot Localized Orbital Locator (LOL, range 0-1) along a line;
# similar to ELF but with sharper basin boundary definition
# Sequence: 3=Output and plot specific property in a line;
# 10=Localized orbital locator (LOL); 1,2=define the line by
# atom indices 1 and 2 (universal, molecule-independent
# default); 0=return to the previous menu after plotting
# FIXED - was ("3", "10") alone, which only opens the "input index of
# two atoms" sub-prompt for defining the line and never actually
# evaluates/plots the property.
LINE_LOL = ("3", "10", "1", "1,2", "0")
# Plot Reduced Density Gradient (RDG) along a line; low-RDG regions
# reveal non-covalent interaction zones
# Sequence: 3=Output and plot specific property in a line; 13=Reduced
# density gradient (RDG); 1=select atom-index mode to define the line; 1,2=atom
# indices 1 and 2 (universal, molecule-independent default); 0=return to the
# previous menu after plotting
# FIXED - was ("3", "13") alone, which only opens the "input index of
# two atoms" sub-prompt for defining the line and never actually
# evaluates/plots the property.
LINE_RDG = ("3", "13", "1", "1,2", "0")
# Plot spin density rho_alpha - rho_beta along a line; used for
# radical and open-shell systems to locate unpaired electrons
# Sequence: 3=Output and plot specific property in a line; 5=Electron
# spin density; 1=select atom-index mode to define the line; 1,2=atom indices 1 and 2
# (universal, molecule-independent default); 0=return to the
# previous menu after plotting
# FIXED - was ("3", "5") alone, which only opens the "input index of
# two atoms" sub-prompt for defining the line and never actually
# evaluates/plots the property.
LINE_SPIN_DENSITY = ("3", "5", "1", "1,2", "0")
# Plot magnitude of the electron density gradient |nabla rho| along a
# line; maxima mark interatomic surface boundaries
# Sequence: 3=Output and plot specific property in a line; 2=Gradient
# norm of rho; 1=select atom-index mode to define the line; 1,2=atom indices 1 and 2
# (universal, molecule-independent default); 0=return to the
# previous menu after plotting
# FIXED - was ("3", "2") alone, which only opens the "input index of
# two atoms" sub-prompt for defining the line and never actually
# evaluates/plots the property.
LINE_GRADIENT_NORM = ("3", "2", "1", "1,2", "0")
# Plot Lagrangian (positive-definite) kinetic energy density G(r)
# along a line
# Sequence: 3=Output and plot specific property in a line;
# 7=Lagrangian kinetic energy density G(r); 1,2=define the
# line by atom indices 1 and 2 (universal,
# molecule-independent default)
# FIXED - was ("3", "7") alone, which only opens the "input index of
# two atoms" sub-prompt for defining the line and never actually
# evaluates/plots the property.
LINE_KINETIC_G = ("3", "7", "1", "1,2", "0")
# Plot Hamiltonian kinetic energy density K(r) along a line; related
# to G: K = G - (1/4) nabla^2 rho
# Sequence: 3=Output and plot specific property in a line;
# 6=Hamiltonian kinetic energy density K(r); 1,2=define the
# line by atom indices 1 and 2 (universal,
# molecule-independent default)
# FIXED - was ("3", "6") alone, which only opens the "input index of
# two atoms" sub-prompt for defining the line and never actually
# evaluates/plots the property.
LINE_KINETIC_K = ("3", "6", "1", "1,2", "0")
# Plot Average Local Ionization Energy (ALIE) along a line; low values
# indicate weakly bound, reactive electrons susceptible to
# electrophilic attack
# Sequence: 3=Output and plot specific property in a line; 18=Average
# local ionization energy (ALIE); 1,2=define the line by
# atom indices 1 and 2 (universal, molecule-independent
# default); 0=return to the previous menu after plotting
# FIXED - was ("3", "18") alone, which only opens the "input index of
# two atoms" sub-prompt for defining the line and never actually
# evaluates/plots the property.
LINE_ALIE = ("3", "18", "1", "1,2", "0")
# Plot Source Function SF(r', r) along a line relative to a fixed
# reference point r set in settings.ini; shows electron-density
# contributions from each spatial region
# Sequence: 3=Output and plot specific property in a line; 19=Source
# function, mode: 1, ref. point: 0.00000 0.00000
# 0.00000; 1=select atom-index mode to define the line; 1,2=atom indices 1 and 2
# (universal, molecule-independent default); 0=return to the
# previous menu after plotting
# FIXED - was ("3", "19") alone, which only opens the "input index of
# two atoms" sub-prompt for defining the line and never actually
# evaluates/plots the property. The source-function mode and reference
# point use Multiwfn's own built-in defaults (mode 1, origin) with no
# further prompt.
LINE_SOURCE_FUNCTION = ("3", "19", "1", "1,2", "0")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 4: Output / plot property in a plane
# ─────────────────────────────────────────────────────────────────────────
# The third tuple element encodes the plane-definition mode: "1" = XY
# plane (input Z value) "2" = XZ plane (input Y value) "3" = YZ plane
# (input X value) "4" = plane defined by three atom indices "5" =
# plane defined by three Cartesian points Produces colour-filled,
# contour, relief, or gradient/vector maps. or output expected results
# Colour-filled map of electron density rho(r) in the XY plane;
# visualises how charge is distributed across the molecule
# Sequence: 4=Output and plot specific property in a plane; 1=Electron
# density (rho); 1=Color-filled map (with/without contour
# lines); ""=accept the recommended grid resolution; 1=define plane
# as XY (input Z value); 0=Z=0 (universal,
# molecule-independent default); -5=return to the main
# menu after plotting
# FIXED - was ("4", "1", "1") alone, which only opens the plane-
# definition sub-prompt (orientation + Z/Y/X value) and never
# actually renders the map.
PLANE_MAP_DENSITY = ("4", "1", "1", "", "1", "0", "-5")
# Colour-filled map of total ESP in the XY plane; red regions are
# nucleophilic (-), blue regions are electrophilic (+)
# Sequence: 4=Output and plot specific property in a plane; 12=Total
# electrostatic potential (ESP); 1=Color-filled map
# (with/without contour lines); ""=accept the recommended grid resolution; 1=define
# plane as XY (input Z value); 0=Z=0 (universal,
# molecule-independent default); -5=return to the main
# menu after plotting
# FIXED - was ("4", "12", "1") alone, which only opens the plane-
# definition sub-prompt (orientation + Z/Y/X value) and never
# actually renders the map.
PLANE_MAP_ESP = ("4", "12", "1", "", "1", "0", "-5")
# Colour-filled map of ELF in the XY plane; red/orange islands mark
# bonding pairs and lone pairs, blue marks depleted regions
# Sequence: 4=Output and plot specific property in a plane; 9=Electron
# localization function (ELF); 1=Color-filled map
# (with/without contour lines); ""=accept the recommended grid resolution; 1=define
# plane as XY (input Z value); 0=Z=0 (universal,
# molecule-independent default); -5=return to the main
# menu after plotting
# FIXED - was ("4", "9", "1") alone, which only opens the plane-
# definition sub-prompt (orientation + Z/Y/X value) and never
# actually renders the map.
PLANE_MAP_ELF = ("4", "9", "1", "", "1", "0", "-5")
# Colour-filled map of LOL in the XY plane; chemically equivalent to
# ELF with cleaner inter-basin boundaries
# Sequence: 4=Output and plot specific property in a plane;
# 10=Localized orbital locator (LOL); 1=Color-filled map
# (with/without contour lines); ""=accept the recommended grid resolution; 1=define
# plane as XY (input Z value); 0=Z=0 (universal,
# molecule-independent default); -5=return to the main
# menu after plotting
# FIXED - was ("4", "10", "1") alone, which only opens the plane-
# definition sub-prompt (orientation + Z/Y/X value) and never
# actually renders the map.
PLANE_MAP_LOL = ("4", "10", "1", "", "1", "0", "-5")
# Colour-filled map of |nabla rho| in the XY plane; highlights
# interatomic surface and shell-structure regions
# Sequence: 4=Output and plot specific property in a plane; 2=Gradient
# norm of rho; 1=Color-filled map (with/without contour
# lines); ""=accept the recommended grid resolution; 1=define plane
# as XY (input Z value); 0=Z=0 (universal,
# molecule-independent default); -5=return to the main
# menu after plotting
# FIXED - was ("4", "2", "1") alone, which only opens the plane-
# definition sub-prompt (orientation + Z/Y/X value) and never
# actually renders the map.
PLANE_MAP_GRADIENT = ("4", "2", "1", "", "1", "0", "-5")
# Colour-filled or contour map of nabla^2 rho in the XY plane;
# negative = charge concentration (bonds/lone pairs), positive =
# depletion
# Sequence: 4=Output and plot specific property in a plane;
# 3=Laplacian of rho; 1=Color-filled map (with/without
# contour lines); ""=accept the recommended grid resolution; 1=define plane
# as XY (input Z value); 0=Z=0 (universal,
# molecule-independent default); -5=return to the main
# menu after plotting
# FIXED - was ("4", "3", "1") alone, which only opens the plane-
# definition sub-prompt (orientation + Z/Y/X value) and never
# actually renders the map.
PLANE_MAP_LAPLACIAN = ("4", "3", "1", "", "1", "0", "-5")
# Colour-filled map of spin density rho_alpha - rho_beta in the XY
# plane; shows location of unpaired electrons in open-shell species
# Sequence: 4=Output and plot specific property in a plane; 5=Electron
# spin density; 1=Color-filled map (with/without contour
# lines); ""=accept the recommended grid resolution; 1=define plane
# as XY (input Z value); 0=Z=0 (universal,
# molecule-independent default); -5=return to the main
# menu after plotting
# FIXED - was ("4", "5", "1") alone, which only opens the plane-
# definition sub-prompt (orientation + Z/Y/X value) and never
# actually renders the map.
PLANE_MAP_SPIN_DENSITY = ("4", "5", "1", "", "1", "0", "-5")
# Colour-filled map of RDG in the XY plane; low-value regions reveal
# non- covalent interactions when combined with sign(lambda2)rho
# colouring
# Sequence: 4=Output and plot specific property in a plane; 13=Reduced
# density gradient (RDG); 1=Color-filled map (with/without
# contour lines); ""=accept the recommended grid resolution; 1=define plane
# as XY (input Z value); 0=Z=0 (universal,
# molecule-independent default); -5=return to the main
# menu after plotting
# FIXED - was ("4", "13", "1") alone, which only opens the plane-
# definition sub-prompt (orientation + Z/Y/X value) and never
# actually renders the map.
PLANE_MAP_RDG = ("4", "13", "1", "", "1", "0", "-5")
# Colour-filled map of sign(lambda2)*rho in the XY plane; negative =
# attractive NCI (H-bond), positive = repulsive steric clash
# Sequence: 4=Output and plot specific property in a plane;
# 15=Sign(lambda2)*rho; 1=Color-filled map (with/without
# contour lines); ""=accept the recommended grid resolution; 1=define plane
# as XY (input Z value); 0=Z=0 (universal,
# molecule-independent default); -5=return to the main
# menu after plotting
# FIXED - was ("4", "15", "1") alone, which only opens the plane-
# definition sub-prompt (orientation + Z/Y/X value) and never
# actually renders the map.
PLANE_MAP_SIGN_LAMBDA2_RHO = ("4", "15", "1", "", "1", "0", "-5")
# Colour-filled map of ALIE in the XY plane; low-ALIE pockets on the
# surface predict electrophilic and radical attack sites
# Sequence: 4=Output and plot specific property in a plane; 18=Average
# local ionization energy (ALIE); 1=Color-filled map
# (with/without contour lines); ""=accept the recommended grid resolution; 1=define
# plane as XY (input Z value); 0=Z=0 (universal,
# molecule-independent default); -5=return to the main
# menu after plotting
# FIXED - was ("4", "18", "1") alone, which only opens the plane-
# definition sub-prompt (orientation + Z/Y/X value) and never
# actually renders the map.
PLANE_MAP_ALIE = ("4", "18", "1", "", "1", "0", "-5")
# Colour-filled map of Lagrangian kinetic energy density G(r) in the
# XY plane
# Sequence: 4=Output and plot specific property in a plane;
# 7=Lagrangian kinetic energy density G(r); 1=Color-filled
# map (with/without contour lines); ""=accept the recommended grid resolution; 1=define
# plane as XY (input Z value); 0=Z=0 (universal,
# molecule-independent default); -5=return to the
# main menu after plotting
# FIXED - was ("4", "7", "1") alone, which only opens the plane-
# definition sub-prompt (orientation + Z/Y/X value) and never
# actually renders the map.
PLANE_MAP_KINETIC_G = ("4", "7", "1", "", "1", "0", "-5")
# Colour-filled map of Hamiltonian kinetic energy density K(r) in the
# XY plane
# Sequence: 4=Output and plot specific property in a plane;
# 6=Hamiltonian kinetic energy density K(r); 1=Color-filled
# map (with/without contour lines); ""=accept the recommended grid resolution; 1=define
# plane as XY (input Z value); 0=Z=0 (universal,
# molecule-independent default); -5=return to the
# main menu after plotting
# FIXED - was ("4", "6", "1") alone, which only opens the plane-
# definition sub-prompt (orientation + Z/Y/X value) and never
# actually renders the map.
PLANE_MAP_KINETIC_K = ("4", "6", "1", "", "1", "0", "-5")
# Colour-filled map of Source Function in the XY plane relative to the
# reference point defined in settings.ini
# Sequence: 4=Output and plot specific property in a plane; 19=Source
# function, mode: 1, ref. point: 0.00000 0.00000
# 0.00000; 1=Color-filled map (with/without contour lines);
# 1=define plane as XY (input Z value); 0=Z=0 (universal,
# molecule-independent default)
# FIXED - was ("4", "19", "1") alone, which only opens the plane-
# definition sub-prompt (orientation + Z/Y/X value) and never
# actually renders the map.
PLANE_MAP_SOURCE_FUNCTION = ("4", "19", "1", "", "1", "0", "-5")
# Colour-filled or contour map of a single MO wavefunction psi_i in
# the XY plane; user is prompted to supply the orbital index
# Sequence: 4=Output and plot specific property in a plane; 4=Value of
# orbital wavefunction; 1=orbital index 1 (a fixed
# representative orbital); 1=Color-filled map (with/without
# contour lines); ""=accept the recommended grid resolution; 1=define plane
# as XY (input Z value); 0=Z=0 (universal,
# molecule-independent default); -5=return to the main
# menu after plotting
# FIXED - was ("4", "4", "1") alone, which only opens the plot-type
# and plane-definition sub-prompts and never actually renders the
# map.
PLANE_MAP_ORBITAL_WAVEFUNCTION = ("4", "4", "1", "1", "", "1", "0", "-5")
# Colour-filled map of Fukui f-(r) in the XY plane via custom-
# operation rho_N - rho_{N-1}; predicts electrophilic attack sites
# Sequence: 4=Output and plot specific property in a plane; 0=Set
# custom operation; -1=custom operation: Fukui f- (density
# difference N/N-1)
# INTERACTIVE ONLY -- requires interactively defining a plane
# (orientation/resolution); also requires
# specifying a file-difference operator for
# Fukui-type functions (N/N-1 states); needs
# additional setup beyond the primary wavefunction
PLANE_MAP_FUKUI_MINUS = ("4", "0", "-1")
# Colour-filled map of Fukui f+(r) in the XY plane via rho_{N+1} -
# rho_N; predicts nucleophilic attack sites
# Sequence: 4=Output and plot specific property in a plane; 0=Set
# custom operation; 1=custom operation: Fukui f+ (density
# difference N+1/N)
# INTERACTIVE ONLY -- requires interactively defining a plane
# (orientation/resolution); excluded per your
# instruction to skip plane-dependent sequences
# (also requires specifying a file-difference
# operator for Fukui-type functions (N+1/N-1
# states); needs additional setup beyond the
# primary wavefunction)
PLANE_MAP_FUKUI_PLUS = ("4", "0", "1")
# Colour-filled map of dual descriptor Delta_f = f+ - f- in the XY
# plane; positive = nucleophilic centre, negative = electrophilic
# centre
# Sequence: 4=Output and plot specific property in a plane; 0=Set
# custom operation; 3=custom operation: dual descriptor (f+
# minus f-)
# INTERACTIVE ONLY -- requires interactively defining a plane
# (orientation/resolution); excluded per your
# instruction to skip plane-dependent sequences
# (also requires specifying a file-difference
# operator for Fukui-type functions (N+1/N-1
# states); needs additional setup beyond the
# primary wavefunction)
PLANE_MAP_DUAL_DESCRIPTOR = ("4", "0", "3")
# Colour-filled map of deformation density rho_mol - rho_promol in the
# XY plane; shows electron redistribution upon chemical bond formation
# Sequence: 4=Output and plot specific property in a plane; -2=Obtain
# deformation property
# INTERACTIVE ONLY -- requires interactively defining a plane
# (orientation/resolution); also requires a
# local Gaussian installation to compute the
# promolecular reference density on the fly
PLANE_MAP_DEFORMATION_DENSITY = ("4", "-2")
# Colour-filled map of promolecular density (superposition of free-
# atom densities) in the XY plane; reference state before bonding
# Sequence: 4=Output and plot specific property in a plane; -1=Obtain
# promolecule property
# INTERACTIVE ONLY -- requires interactively defining a plane
# (orientation/resolution); also requires a
# local Gaussian installation to compute the
# promolecular reference density on the fly
PLANE_MAP_PROMOLECULAR_DENSITY = ("4", "-1")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 5: Cube / grid generation
# ─────────────────────────────────────────────────────────────────────────
# Evaluates a real-space function on a 3D grid and exports a Gaussian
# .cube file compatible with VMD, GaussView, ChemCraft, Molekel, etc.
# Grid quality codes: "1" ~ 50^3 points (low / preview) "2" ~ 80^3
# points (medium, default for most workflows) "3" ~ 120^3 points
# (high, for publication-quality figures) "0" at the post-process
# prompt triggers cube export and returns.
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 11=Local information entropy;
# 2=Medium quality grid, covering whole system, about 512000
# points in total; 0=Return to main menu
CUBE_LOCAL_INFORMATION_ENTROPY = ("5", "11", "2", "0")
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 8=Electrostatic potential from
# nuclear charges; 2=Medium quality grid, covering whole
# system, about 512000 points in total; 0=Return to main
# menu
CUBE_ELECTROSTATIC_POTENTIAL_FROM_CHARGE = ("5", "8", "2", "0")
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 14=RDG with promolecular
# approximation; 2=Medium quality grid, covering whole
# system, about 512000 points in total; 0=Return to main
# menu
CUBE_RDG_QUICK = ("5", "14", "2", "0")
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 17=Correlation hole for alpha,
# ref. point: 0.00000 0.00000 0.00000; 2=Medium
# quality grid, covering whole system, about 512000 points
# in total; 1=Save graph of isosurface to file in current
# folder; 2=export data to a Gaussian-type cube file;
# 0=return to the previous menu
CUBE_CORRELATION_HOLE_ALPHA = ("5", "17", "2", "1", "2", "0")
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 20=Electron delocal. range func.
# EDR(r;d); 2=length scale d = 2 Bohr (parameter for the
# EDR(r;d) function); 2=Medium quality grid, covering whole
# system, about 512000 points in total; 2=export data to a
# Gaussian-type cube file; 0=return to the previous menu
CUBE_EDR = ("5", "20", "2", "2", "2", "0")
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 22=Delta-g (promolecular
# approximation); 2=Medium quality grid, covering whole
# system, about 512000 points in total; 2=Export data to a
# Gaussian-type cube file in current folder; 0=return to the
# previous menu
CUBE_DELTAG_PROMOLECULAR_APPROX = ("5", "22", "2", "2", "0")
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 23=Delta-g (Hirshfeld
# partition); 2=Medium quality grid, covering whole system,
# about 512000 points in total; 2=Export data to a
# Gaussian-type cube file in current folder; 0=return to the
# previous menu
CUBE_DELTAG_HIRSHFELD_PAER_APPROX = ("5", "23", "2", "2", "0")
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 24=Interaction region indicator
# (IRI); 2=Medium quality grid, covering whole system, about
# 512000 points in total; 2=Export data to a Gaussian-type
# cube file in current folder; 0=return to the previous menu
CUBE_IRI = ("5", "24", "2", "2", "0")
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 25=van der Waals potential
# (probe=C ); 2=Medium quality grid, covering whole system,
# about 512000 points in total; 2=Export data to a
# Gaussian-type cube file in current folder; 0=return to the
# previous menu
CUBE_VDW_POTENTIAL = ("5", "25", "2", "2", "0")
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 18=Average local ionization
# energy (ALIE); 2=Medium quality grid, covering whole
# system, about 512000 points in total; 2=Export data to a
# Gaussian-type cube file in current folder; 0=return to the
# previous menu
CUBE_ALIE = ("5", "18", "2", "2", "0")
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 19=Source function, mode: 1,
# ref. point: 0.00000 0.00000 0.00000; 2=Medium
# quality grid, covering whole system, about 512000 points
# in total; 2=Export data to a Gaussian-type cube file in
# current folder; 0=return to the previous menu
CUBE_SOURCE_FUNCTION = ("5", "19", "2", "2", "0")
# Generate medium-quality .cube of electron density rho(r); standard
# input for VMD/GaussView isosurface rendering
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 1=Electron density (rho);
# 2=Medium quality grid, covering whole system, about 512000
# points in total; 2=Export data to a Gaussian-type cube
# file in current folder; 0=return to the previous menu
CUBE_DENSITY = ("5", "1", "2", "2", "0")
# Generate medium-quality .cube of spin density rho_alpha - rho_beta;
# visualise unpaired electrons in radicals and open-shell molecules
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 5=Electron spin density;
# 2=Medium quality grid, covering whole system, about 512000
# points in total; 2=Export data to a Gaussian-type cube
# file in current folder; 0=return to the previous menu
CUBE_SPIN_DENSITY = ("5", "5", "2", "2", "0")
# Generate medium-quality .cube of ELF; bonding pairs, lone pairs, and
# core shells visible as isosurfaces
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 9=Electron localization function
# (ELF); 2=Medium quality grid, covering whole system, about
# 512000 points in total; 2=Export data to a Gaussian-type
# cube file in current folder; 0=return to the previous menu
CUBE_ELF = ("5", "9", "2", "2", "0")
# Generate medium-quality .cube of LOL; electron-pair localisation
# function with sharper basin boundaries than ELF
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 10=Localized orbital locator
# (LOL); 2=Medium quality grid, covering whole system, about
# 512000 points in total; 2=Export data to a Gaussian-type
# cube file in current folder; 0=return to the previous menu
CUBE_LOL = ("5", "10", "2", "2", "0")
# Generate medium-quality .cube of total ESP; map onto rho=0.001
# isosurface to produce a surface electrostatic potential map
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 12=Total electrostatic potential
# (ESP); 2=Medium quality grid, covering whole system, about
# 512000 points in total; 2=export data to a Gaussian-type
# cube file; 0=return to the previous menu
CUBE_ESP = ("5", "12", "2", "2", "0")
# Generate medium-quality .cube of nabla^2 rho; negative isosurfaces
# encode charge concentration (covalent bonds, lone pairs, shells)
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 3=Laplacian of rho; 2=Medium
# quality grid, covering whole system, about 512000 points
# in total; 2=Export data to a Gaussian-type cube file in
# current folder; 0=return to the previous menu
CUBE_LAPLACIAN = ("5", "3", "2", "2", "0")
# Generate medium-quality .cube of |nabla rho|; high-value isosurfaces
# mark interatomic and atomic-shell boundaries
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 2=Gradient norm of rho; 2=Medium
# quality grid, covering whole system, about 512000 points
# in total; 2=Export data to a Gaussian-type cube file in
# current folder; 0=return to the previous menu
CUBE_GRADIENT_NORM = ("5", "2", "2", "2", "0")
# Generate medium-quality .cube of G(r), the positive-definite
# Lagrangian kinetic energy density
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 7=Lagrangian kinetic energy
# density G(r); 2=Medium quality grid, covering whole
# system, about 512000 points in total; 2=Export data to a
# Gaussian-type cube file in current folder; 0=return to the
# previous menu
CUBE_KINETIC_G = ("5", "7", "2", "2", "0")
# Generate medium-quality .cube of K(r), the Hamiltonian kinetic
# energy density; K = G - (1/4) nabla^2 rho
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 6=Hamiltonian kinetic energy
# density K(r); 2=Medium quality grid, covering whole
# system, about 512000 points in total; 2=Export data to a
# Gaussian-type cube file in current folder; 0=return to the
# previous menu
CUBE_KINETIC_K = ("5", "6", "2", "2", "0")
# Generate medium-quality .cube of RDG; render at low isovalue (~0.5)
# together with sign(lambda2)rho cube for NCI isosurface colouring
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 13=Reduced density gradient
# (RDG); 2=Medium quality grid, covering whole system, about
# 512000 points in total; 2=Export data to a Gaussian-type
# cube file in current folder; 0=return to the previous menu
CUBE_RDG = ("5", "13", "2", "2", "0")
# Generate medium-quality .cube of sign(lambda2)*rho; colour-maps onto
# RDG isosurface: blue=H-bond, green=vdW, red=steric repulsion
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 15=Sign(lambda2)*rho; 2=Medium
# quality grid, covering whole system, about 512000 points
# in total; 2=Export data to a Gaussian-type cube file in
# current folder; 0=return to the previous menu
CUBE_SIGN_LAMBDA2_RHO = ("5", "15", "2", "2", "0")
# Generate medium-quality .cube of a single MO wavefunction psi_i;
# user is prompted for the orbital index; standard for orbital
# visualisation INTERACTIVE
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 4=Value of orbital wavefunction;
# 2=orbital index 2 (a fixed representative orbital);
# 2=Medium quality grid, covering whole system, about 512000
# points in total; 0=return to the previous menu
CUBE_ORBITAL_WAVEFUNCTION = ("5", "4", "2", "2", "0")
# Generate medium-quality .cube of Fukui f-(r) via two-wavefunction
# subtraction rho_N - rho_{N-1}; maps electrophilic attack
# susceptibility
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 0=Set custom operation;
# -1=custom operation: Fukui f- (density difference N/N-1);
# 2=Gradient norm of rho; 0=return to the previous menu
CUBE_FUKUI_MINUS = ("5", "0", "-1", "2", "0")
# Generate medium-quality .cube of Fukui f+(r) via rho_{N+1} - rho_N;
# maps nucleophilic attack susceptibility
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 0=Set custom operation; 1=custom
# operation: Fukui f+ (density difference N+1/N); 2=export
# data to a Gaussian-type cube file; 0=return to the
# previous menu
# INTERACTIVE ONLY -- requires specifying a file-difference operator
# for Fukui-type functions (N+1/N-1 states); needs
# additional setup beyond the primary wavefunction
CUBE_FUKUI_PLUS = ("5", "0", "1", "2", "0")
# Generate medium-quality .cube of dual descriptor f+ - f-; positive
# isosurfaces are nucleophilic sites, negative are electrophilic
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 0=Set custom operation; 3=custom
# operation: dual descriptor (f+ minus f-); 2=export data to
# a Gaussian-type cube file; 0=return to the previous menu
# INTERACTIVE ONLY -- requires specifying a file-difference operator
# for Fukui-type functions (N+1/N-1 states); needs
# additional setup beyond the primary wavefunction
CUBE_DUAL_DESCRIPTOR = ("5", "0", "3", "2", "0")
# Generate medium-quality .cube of promolecular density (superposition
# of free-atom densities); used as a reference before bond formation
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); -1=Obtain promolecule property;
# 1=promolecular property: density; 2=export data to a
# Gaussian-type cube file; 0=return to the previous menu
# INTERACTIVE ONLY -- requires a local Gaussian installation to be
# found on PATH
CUBE_PROMOLECULAR_DENSITY = ("5", "-1", "1", "2", "0")
# Generate medium-quality .cube of deformation density Delta_rho =
# rho_mol # rho_promol; shows how bonding redistributes electron
# density
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); -2=Obtain deformation property;
# 1=deformation property: density; 2=export data to a
# Gaussian-type cube file; 0=return to the previous menu
# INTERACTIVE ONLY -- requires a local Gaussian installation to be
# found on PATH
CUBE_DEFORMATION_DENSITY = ("5", "-2", "1", "2", "0")
# Generate HIGH-quality .cube of electron density (~120^3 grid); finer
# isosurfaces suitable for publication figures
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 1=Electron density (rho); 3=High
# quality grid, covering whole system, about 1728000
# points in total; 0=return to the previous menu
CUBE_DENSITY_HIGH = ("5", "1", "3", "0")
# Generate HIGH-quality .cube of total ESP (~120^3 grid); needed for
# accurate surface-ESP colour maps on large or complex molecules
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 12=Total electrostatic potential
# (ESP); 3=High quality grid, covering whole system, about
# 1728000 points in total; 0=return to the previous menu
CUBE_ESP_HIGH = ("5", "12", "3", "0")
# Generate HIGH-quality .cube of ELF (~120^3 grid); resolves fine
# bonding features in systems requiring detailed electron-pair
# analysis
# Sequence: 5=Output and plot specific property within a spatial
# region (calc. grid data); 9=Electron localization function
# (ELF); 3=High quality grid, covering whole system, about
# 1728000 points in total; 0=return to the previous menu
CUBE_ELF_HIGH = ("5", "9", "3", "0")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 6: Check & modify wavefunction
# ─────────────────────────────────────────────────────────────────────────
# Provides subfunctions to inspect, edit, and save the loaded
# wavefunction.
# FIXED - every entry below needed a trailing "-1" (verified against
# the real binary): each action drops back into this same Menu 6
# submenu rather than the main menu, and quitting from there without
# "-1" (Return) crashes. "0" from this submenu is NOT a return -- it
# means "Save the present wavefunction to new.wfn", a different
# action with a side effect; this comment previously said otherwise.
# Sequence: 6=Check & modify wavefunction; 5=Print coefficient matrix
# in basis functions; 1=Print on screen
PRINT_COEFFICIENT_MATRIX = ("6", "5", "1", "-1")
# Sequence: 6=Check & modify wavefunction; 6=Print density matrix in
# basis function; 1=Print on screen
PRINT_DENSITY_MATRIX = ("6", "6", "1", "-1")
# Sequence: 6=Check & modify wavefunction; 7=Print various kinds of
# integral matrix between basis functions; 0=Fock/KS matrix;
# 1=Print on screen; 1=Generating Fock/KS matrix by MO
# energies and coefficients as well as overlap matrix
# KNOWN LIMITATION - on some input files this crashes inside
# Multiwfn's overlap-matrix orthogonalization/inversion step with a
# molecule-specific numerical error; not fixable client-side, the
# sequence itself is correct.
PRINT_INTEGRAL_MATRIX_FOCK = ("6", "7", "0", "1", "1", "-1")
# Sequence: 6=Check & modify wavefunction; 7=Print various kinds of
# integral matrix between basis functions; 1=Overlap
# integral; 1=Print on screen
PRINT_INTEGRAL_MATRIX_OVERLAP = ("6", "7", "1", "1", "-1")
# Sequence: 6=Check & modify wavefunction; 7=Print various kinds of
# integral matrix between basis functions; 2=Electric dipole
# moment integral; 1=Print on screen
# KNOWN LIMITATION - on some input files this crashes inside
# Multiwfn's overlap-matrix orthogonalization/inversion step with a
# molecule-specific numerical error; not fixable client-side, the
# sequence itself is correct.
PRINT_INTEGRAL_MATRIX_ELECTRIC_DIPOLE = ("6", "7", "2", "1", "-1")
# Sequence: 6=Check & modify wavefunction; 7=Print various kinds of
# integral matrix between basis functions; 3=Magnetic dipole
# moment integral; 1=Print on screen
# KNOWN LIMITATION - on some input files this crashes inside
# Multiwfn's overlap-matrix orthogonalization/inversion step with a
# molecule-specific numerical error; not fixable client-side, the
# sequence itself is correct.
PRINT_INTEGRAL_MATRIX_MAGNETIC_DIPOLE = ("6", "7", "3", "1", "-1")
# Sequence: 6=Check & modify wavefunction; 7=Print various kinds of
# integral matrix between basis functions; 4=Velocity
# integral; 1=Print on screen
# KNOWN LIMITATION - on some input files this crashes inside
# Multiwfn's overlap-matrix orthogonalization/inversion step with a
# molecule-specific numerical error; not fixable client-side, the
# sequence itself is correct.
PRINT_INTEGRAL_MATRIX_VELOCITY = ("6", "7", "4", "1", "-1")
# Sequence: 6=Check & modify wavefunction; 7=Print various kinds of
# integral matrix between basis functions; 5=Kinetic energy
# integral; 1=Print on screen
PRINT_INTEGRAL_MATRIX_EKINETIC = ("6", "7", "5", "1", "-1")
# Sequence: 6=Check & modify wavefunction; 7=Print various kinds of
# integral matrix between basis functions; 6=Electric
# quadrupole moment integral; 1=List all GTFs
# KNOWN LIMITATION - on some input files this crashes inside
# Multiwfn's overlap-matrix orthogonalization/inversion step with a
# molecule-specific numerical error; not fixable client-side, the
# sequence itself is correct.
PRINT_INTEGRAL_MATRIX_QUADRUPOLE = ("6", "7", "6", "1", "-1")
# Sequence: 6=Check & modify wavefunction; 7=Print various kinds of
# integral matrix between basis functions; 7=Electric
# octopole moment integral; 1=List all GTFs
# KNOWN LIMITATION - on some input files this crashes inside
# Multiwfn's overlap-matrix orthogonalization/inversion step with a
# molecule-specific numerical error; not fixable client-side, the
# sequence itself is correct.
PRINT_INTEGRAL_MATRIX_OCTOPOLE = ("6", "7", "7", "1", "-1")
# Sequence: 6=Check & modify wavefunction; 7=Print various kinds of
# integral matrix between basis functions; 8=Electric
# hexadecapole moment integral; 1=List all GTFs
# KNOWN LIMITATION - on some input files this crashes inside
# Multiwfn's overlap-matrix orthogonalization/inversion step with a
# molecule-specific numerical error; not fixable client-side, the
# sequence itself is correct.
PRINT_INTEGRAL_MATRIX_HEXADECAPOLE = ("6", "7", "8", "1", "-1")
# #INTERACTIVE SEQUENCES - to be tested #CORRECT SEQUENCES # Save the
# (possibly modified) wavefunction to new.wfn; also converts #
# fch/molden to .wfn format; zero-occupation orbitals are dropped #
# automatically SAVE_WFN = ("6", "0") Print centre atom, angular-
# momentum type (s/p/d/f/...), and exponent for # every Gaussian-type
# function (GTF) in the basis PRINT_ALL_GTF = ("6", "1", "-1") Print shell
# assignments, contracted function types, and GTF index ranges # for
# every basis function PRINT_ALL_BASIS_FUNCTIONS = ("6", "2", "-1") # Print
# index, energy, occupation number, and spin type for every o # rbital
# in the loaded wavefunction PRINT_ORBITAL_INFO = ("6", "3", "-1") # Print
# the one-particle density matrix P expressed in the basis-function #
# representation PRINT_DENSITY_MATRIX = ("6", "6", "0", "-1") # Manually set
# the occupation number of selected orbitals; set to 0 to remove their
# contribution from subsequent real-space function evaluations
# MODIFY_OCCUPATION = ("6", "26", "0") # Remove all core (inner-shell)
# orbitals from the wavefunction, retaining # only valence-shell
# orbitals for subsequent analyses DELETE_INNER_ORBITALS = ("6", "34",
# "0") Print centre atom, angular-momentum type (s/p/d/f/...), and
# exponent for every Gaussian-type function (GTF) in the basis
# Sequence: 6=Check & modify wavefunction; 1=List all GTFs
PRINT_ALL_GTF = ("6", "1", "-1")
# Print shell assignments, contracted function types, and GTF index
# ranges for every basis function
# Sequence: 6=Check & modify wavefunction; 2=List all basis functions
PRINT_ALL_BASIS_FUNCTIONS = ("6", "2", "-1")
# Print index, energy, occupation number, and spin type for every
# orbital in the loaded wavefunction
# Sequence: 6=Check & modify wavefunction; 3=List all orbitals
PRINT_ORBITAL_INFO = ("6", "3", "-1")
# Save the (possibly modified) wavefunction to new.wfn in current
# folder; also converts fch/molden to .wfn format, dropping zero-
# occupation orbitals automatically
# Sequence: 6=Check & modify wavefunction; 0=Save the present
# wavefunction to new.wfn file in current folder
# FIXED - the trailing "-1" was missing; verified against the real
# binary that the whole Menu 6 ("Check & modify wavefunction") family
# drops back into its own submenu after each action, which crashes
# on quit without an explicit "-1" (Return) first. Using plain "0"
# here would be wrong too: within that submenu "0" means "Save the
# present wavefunction", a different action with a side effect.
SAVE_WFN = ("6", "0", "-1")
# Remove all core (inner-shell) orbitals from the wavefunction and
# save the result to new.wfn; retains only valence-shell orbitals for
# subsequent analyses
# Sequence: 6=Check & modify wavefunction; 34=Set occupation number of
# inner orbitals to zero; 0=Save the present wavefunction to
# new.wfn file in current folder
# FIXED - the trailing "-1" was missing, for the same reason as
# SAVE_WFN above.
DELETE_INNER_ORBITALS = ("6", "34", "0", "-1")
# Manually set the occupation number of selected orbitals (e.g. to
# zero out a subset for a custom electron count)
# Sequence: 6=Check & modify wavefunction; 26=Set occupation of some
# orbitals; 0=select all orbitals (per 'Input 0 can select
# all orbitals')
# INTERACTIVE ONLY -- requires an interactively-specified target
# occupation-number value after selecting orbitals
# (e.g. '1.2', '+1.1', 'i' to restore); no single
# non-interactive default makes sense for an
# arbitrary molecule
MODIFY_OCCUPATION = ("6", "26", "0")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 7: Population analysis & atomic charges
# ─────────────────────────────────────────────────────────────────────────
# Hirshfeld-family methods require atomic reference densities: "1" →
# use Multiwfn's built-in sphericalised free-atom densities "n" → skip
# writing the .chg output file to disk "0" → return to main menu after
# printing charges
# Sequence: 7=Population analysis and calculation of atomic charges;
# 5=Mulliken atom & basis function population analysis;
# 2=Output gross atomic population matrix and decompose it;
# n=no (decline the fragment/mirror-plane restriction)
# FIXED - two trailing "0"s were missing; verified against the real
# binary that the computation succeeds but leaves two nested
# submenus open ("Mulliken population analysis", then "Population
# analysis and atomic charges"), each needing its own "0" (Return)
# before quit.
MULLIKEN_DECOMPOSE_ATOMIC_POPULATION = ("7", "5", "2", "n", "0", "0")
# Sequence: 7=Population analysis and calculation of atomic charges;
# 5=Mulliken atom & basis function population analysis;
# 3=Output gross basis function population matrix and
# decompose it; n=no (decline the fragment/mirror-plane
# restriction)
# FIXED - the trailing "0" was missing for the same reason as
# MULLIKEN_DECOMPOSE_ATOMIC_POPULATION above.
MULLIKEN_DECOMPOSE_BASIS_FUNCTION = ("7", "5", "3", "n", "0", "0")
# Lowdin atomic charges via Lowdin orthogonalisation; slightly more
# basis- set stable than Mulliken but still dependent on basis choice
# INTERACTIVE
# Sequence: 7=Population analysis and calculation of atomic charges;
# 6=Lowdin atom & basis function population analysis;
# ""=press Enter to accept the default (print results to
# screen instead of a file); 0=return to the previous menu
# FIXED - was ("7", "6", "ENTER", "0"); the literal string "ENTER" was
# sent to Multiwfn's stdin as real input (not a blank line), which the
# "export to file? y/n/ENTER" prompt cannot parse. An empty string
# joins to a blank line, which is what actually presses Enter.
LOWDIN_POPULATION = ("7", "6", "", "0")
# INGNORE FOR NOW Electronegativity Equalization Method (EEM) charges;
# fast geometry-based empirical model requiring no wavefunction
# evaluation NEEDS MOL2
# Sequence: 7=Population analysis and calculation of atomic charges;
# 17=Electronegativity Equalization Method (EEM) atomic
# charge; n=no (decline the fragment/mirror-plane
# restriction); 0=return to the previous menu
EEM_CHARGE = ("7", "17", "n", "0")
# Hirshfeld atomic charges from deformation-density partitioning;
# qualitatively correct but systematically underestimates charge
# transfer
# Sequence: 7=Population analysis and calculation of atomic charges;
# 1=Hirshfeld atomic charge; 1=Use build-in sphericalized
# atomic densities in free-states (more convenient); n=no
# (decline the fragment/mirror-plane restriction); 0=return
# to the previous menu
HIRSHFELD_CHARGE = ("7", "1", "1", "n", "0")
# Voronoi Deformation Density charges; Hirshfeld variant using Voronoi
# cell weights instead of Hirshfeld weights; results similar to
# Hirshfeld
# Sequence: 7=Population analysis and calculation of atomic charges;
# 2=Voronoi deformation density (VDD) atom population; 1=Use
# build-in sphericalized atomic densities in free-states
# (more convenient); n=no (decline the fragment/mirror-plane
# restriction); 0=return to the previous menu
VDD_POPULATION = ("7", "2", "1", "n", "0")
# Mulliken atomic charges and basis-function populations; oldest
# method, highly basis-set dependent, avoid with diffuse basis
# functions
# Sequence: 7=Population analysis and calculation of atomic charges;
# 5=Mulliken atom & basis function population analysis;
# 1=Output Mulliken population and atomic charges; n=no
# (decline the fragment/mirror-plane restriction); 0=return
# to the previous menu
MULLIKEN_POPULATION = ("7", "5", "1", "n", "0")
# Ros-Schuit C-squared Population Analysis (SCPA); modified Mulliken
# scheme that prevents negative population numbers
# Sequence: 7=Population analysis and calculation of atomic charges;
# 7=Modified Mulliken atom population defined by Ros &
# Schuit (SCPA); n=no (decline the fragment/mirror-plane
# restriction); 0=return to the previous menu
SCPA_POPULATION = ("7", "7", "n", "0")
# Stout-Politzer modified Mulliken charges; cross-terms partitioned by
# the ratio of squared orbital coefficients
# Sequence: 7=Population analysis and calculation of atomic charges;
# 8=Modified Mulliken atom population defined by Stout &
# Politzer; n=no (decline the fragment/mirror-plane
# restriction); 0=return to the previous menu
STOUT_POLITZER_POPULATION = ("7", "8", "n", "0")
# Bickelhaupt modified Mulliken charges; cross-terms weighted by the
# total local populations summed across all orbitals
# Sequence: 7=Population analysis and calculation of atomic charges;
# 9=Modified Mulliken atom population defined by
# Bickelhaupt; n=no (decline the fragment/mirror-plane
# restriction); 0=return to the previous menu
BICKELHAUPT_POPULATION = ("7", "9", "n", "0")
# Becke atomic charges with atomic-dipole-moment correction applied;
# reasonable for typical organic systems using default CSD radii
# Sequence: 7=Population analysis and calculation of atomic charges;
# 10=Becke atomic charge with atomic dipole moment
# correction; 0=return to the previous menu; n=no (decline
# the fragment/mirror-plane restriction); 0=return to the
# previous menu
BECKE_CHARGE = ("7", "10", "0", "n", "0")
# Atomic Dipole moment Corrected Hirshfeld (ADCH) charges; exactly
# reproduces the molecular dipole moment and gives reliable ESP;
# highly recommended
# Sequence: 7=Population analysis and calculation of atomic charges;
# 11=Atomic dipole corrected Hirshfeld atomic charge (ADCH)
# (recommended); 1=Use build-in sphericalized atomic
# densities in free-states (more convenient); n=no (decline
# the fragment/mirror-plane restriction); 0=return to the
# previous menu
ADCH_CHARGE = ("7", "11", "1", "n", "0")
# CHELPG ESP-fitting charges on a cubic grid of points; best
# rotational invariance among ESP-fit methods; widely used for force-
# field parametrisation
# Sequence: 7=Population analysis and calculation of atomic charges;
# 12=CHELPG ESP fitting atomic charge; 1=Start calculation!;
# n=no (decline the fragment/mirror-plane restriction);
# 0=return to the previous menu
# INTERACTIVE ONLY -- Multiwfn offers a default via pressing ENTER
# here, but the exact blank-token sequence to
# reach it wasn't reliably confirmed in testing --
# needs manual verification
CHELPG_CHARGE = ("7", "12", "1", "n", "0")
# Merz-Kollmann (MK) ESP-fitting charges on concentric shells at
# 1.4-2.0x vdW radii; standard for AMBER/GAFF parametrisation
# Sequence: 7=Population analysis and calculation of atomic charges;
# 13=Merz-Kollmann (MK) ESP fitting atomic charge; 1=Start
# calculation!; n=no (decline the fragment/mirror-plane
# restriction); 0=return to the previous menu
# INTERACTIVE ONLY -- Multiwfn offers a default via pressing ENTER
# here, but the exact blank-token sequence to
# reach it wasn't reliably confirmed in testing --
# needs manual verification
MK_CHARGE = ("7", "13", "1", "n", "0")
# CM5 charges (charge model 5); Hirshfeld-based with empirical
# correction terms for improved dipole-moment reproduction across
# diverse molecules
# Sequence: 7=Population analysis and calculation of atomic charges;
# 16=CM5 atomic charge; 1=Use build-in sphericalized atomic
# densities in free-states (more convenient); n=no (decline
# the fragment/mirror-plane restriction); 0=return to the
# previous menu
CM5_CHARGE = ("7", "16", "1", "n", "0")
# RESP (Restrained ESP) charges; ESP fit with hyperbolic restraint
# toward zero; the standard charge model for AMBER/GAFF force fields
# FORCED DEFAULTS
# Sequence: 7=Population analysis and calculation of atomic charges;
# 18=Restrained ElectroStatic Potential (RESP) atomic
# charge; 1n=start standard two-stage RESP fitting ('1'),
# declining the equivalence-constraint follow-up prompt
# ('n'); 0=return to the previous menu
RESP_CHARGE = ("7", "18", "1n", "0")
# Gasteiger-Marsili empirical charges; purely connectivity-based,
# extremely fast, no wavefunction needed; suitable for large databases
# Sequence: 7=Population analysis and calculation of atomic charges;
# 19=Gasteiger (PEOE) charge; n=no (decline the
# fragment/mirror-plane restriction); 0=return to the
# previous menu
GASTEIGER_CHARGE = ("7", "19", "n", "0")
# Minimal Basis Iterative Stockholder (MBIS) charges; information-
# theoretic partitioning giving excellent dipole and higher-multipole
# reproduction
# Sequence: 7=Population analysis and calculation of atomic charges;
# 20=Minimal Basis Iterative Stockholder (MBIS) charge;
# 1=Start calculation!; n=no (decline the
# fragment/mirror-plane restriction); 0=return to the
# previous menu
MBIS_CHARGE = ("7", "20", "1", "n", "0")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 8: Orbital composition analysis
# ─────────────────────────────────────────────────────────────────────────
# Decomposes each MO into percentage contributions from basis
# functions, shells, atoms, or user-defined fragments.
# Sequence: 8=Orbital composition analysis; 1=Orbital composition
# analysis with Mulliken partition; h=select the HOMO;
# 0=return to the previous menu
ORBITAL_COMPOSITION_MULLIKEN_HOMO = ("8", "1", "h", "0")
# Sequence: 8=Orbital composition analysis; 1=Orbital composition
# analysis with Mulliken partition; l=select the LUMO;
# 0=return to the previous menu
ORBITAL_COMPOSITION_MULLIKEN_LUMO = ("8", "1", "l", "0")
# Sequence: 8=Orbital composition analysis; 1=Orbital composition
# analysis with Mulliken partition; a=select all orbitals;
# 0=return to the previous menu
ORBITAL_COMPOSITION_MULLIKEN_ALL = ("8", "1", "a", "0")
# Sequence: 8=Orbital composition analysis; 2=Orbital composition
# analysis with Stout-Politzer partition; h=select the HOMO;
# 0=return to the previous menu
ORBITAL_COMPOSITION_STOUT_POLITZER_HOMO = ("8", "2", "h", "0")
# Sequence: 8=Orbital composition analysis; 2=Orbital composition
# analysis with Stout-Politzer partition; l=select the LUMO;
# 0=return to the previous menu
ORBITAL_COMPOSITION_STOUT_POLITZER_LUMO = ("8", "2", "l", "0")
# Sequence: 8=Orbital composition analysis; 2=Orbital composition
# analysis with Stout-Politzer partition; a=select all
# orbitals; 0=return to the previous menu
ORBITAL_COMPOSITION_STOUT_POLITZER_ALL = ("8", "2", "a", "0")
# Sequence: 8=Orbital composition analysis; 3=Orbital composition
# analysis with Ros-Schuit (SCPA) partition; h=select the
# HOMO; 0=return to the previous menu
ORBITAL_COMPOSITION_SCPA_HOMO = ("8", "3", "h", "0")
# Sequence: 8=Orbital composition analysis; 3=Orbital composition
# analysis with Ros-Schuit (SCPA) partition; l=select the
# LUMO; 0=return to the previous menu
ORBITAL_COMPOSITION_SCPA_LUMO = ("8", "3", "l", "0")
# Sequence: 8=Orbital composition analysis; 3=Orbital composition
# analysis with Ros-Schuit (SCPA) partition; a=select all
# orbitals; 0=return to the previous menu
ORBITAL_COMPOSITION_SCPA_ALL = ("8", "3", "a", "0")
# Sequence: 8=Orbital composition analysis; 8=Calculate atom and
# fragment contributions by Hirshfeld method; 1=Orbital
# composition analysis with Mulliken partition; h=select the
# HOMO
FRAGMENT_CONTRIBUTION_HIRSHFELD_HOMO = ("8", "8", "1", "h")
# Sequence: 8=Orbital composition analysis; 8=Calculate atom and
# fragment contributions by Hirshfeld method; 1=Orbital
# composition analysis with Mulliken partition; l=select the
# LUMO
FRAGMENT_CONTRIBUTION_HIRSHFELD_LUMO = ("8", "8", "1", "l")
# Sequence: 8=Orbital composition analysis; 8=Calculate atom and
# fragment contributions by Hirshfeld method; 1=Orbital
# composition analysis with Mulliken partition; -1=Define
# fragment 1 (for option 1~6)
FRAGMENT_CONTRIBUTION_HIRSHFELD_ALL = ("8", "8", "1", "-1")
# Sequence: 8=Orbital composition analysis; 8=Calculate atom and
# fragment contributions by Hirshfeld method; 1=Orbital
# composition analysis with Mulliken partition; -4=answer to
# the atom-index prompt for which atoms to print
ATOM_CONTRIBUTION_HIRSHFELD = ("8", "8", "1", "-4")
# Sequence: 8=Orbital composition analysis; 9=Calculate atom and
# fragment contributions by Becke method; 1=Orbital
# composition analysis with Mulliken partition; h=select the
# HOMO
FRAGMENT_CONTRIBUTION_BECKE_HOMO = ("8", "9", "1", "h")
# Sequence: 8=Orbital composition analysis; 9=Calculate atom and
# fragment contributions by Becke method; 1=Orbital
# composition analysis with Mulliken partition; l=select the
# LUMO
FRAGMENT_CONTRIBUTION_BECKE_LUMO = ("8", "9", "1", "l")
# Sequence: 8=Orbital composition analysis; 9=Calculate atom and
# fragment contributions by Becke method; 1=Orbital
# composition analysis with Mulliken partition; -1=Define
# fragment 1 (for option 1~6)
FRAGMENT_CONTRIBUTION_BECKE_ALL = ("8", "9", "1", "-1")
# Sequence: 8=Orbital composition analysis; 9=Calculate atom and
# fragment contributions by Becke method; 1=Orbital
# composition analysis with Mulliken partition; -4=answer to
# the atom-index prompt for which atoms to print
ATOM_CONTRIBUTION_BECKE = ("8", "9", "1", "-4")
# Mulliken fragment composition: prints the total percentage of a pre-
# defined fragment in every occupied MO as a table
# Sequence: 8=Orbital composition analysis; 4=Print frag. 1 &
# inter-fragment compositions in all orbitals (Mulliken);
# 0=return to the previous menu
ORBITAL_COMPOSITION_FRAGMENT_MULLIKEN = ("8", "4", "0")
# Stout-Politzer fragment composition including inter-fragment cross-
# term breakdown
# Sequence: 8=Orbital composition analysis; 5=Print frag. 1 &
# inter-fragment compositions in all orbitals
# (Stout-Politzer); 0=return to the previous menu
ORBITAL_COMPOSITION_FRAGMENT_STOUT = ("8", "5", "0")
# SCPA fragment composition: sums C^2 contributions of all fragment
# basis functions per orbital; no negative values
# Sequence: 8=Orbital composition analysis; 6=Print frag. 1
# compositions in all orbitals (SCPA); 0=return to the
# previous menu
ORBITAL_COMPOSITION_FRAGMENT_SCPA = ("8", "6", "0")
# Natural Atomic Orbital (NAO) composition using the MO-in-NAO
# coefficient matrix from NBO output; excellent basis-set stability
# for occupied MOs
# Sequence: 8=Orbital composition analysis; 7=Orbital composition
# analysis by natural atomic orbital (NAO) method; 0=return
# to the previous menu
ORBITAL_COMPOSITION_NAO = ("8", "7", "0")
# Hirshfeld orbital composition: integral of |psi_i|^2 * w_A(r) for
# each atom A; highly stable regardless of basis-set choice
# Sequence: 8=Orbital composition analysis; 8=Calculate atom and
# fragment contributions by Hirshfeld method; 0=return to
# the previous menu
ORBITAL_COMPOSITION_HIRSHFELD = ("8", "8", "0")
# Becke orbital composition: Becke-partition integral of |psi_i|^2 per
# atom no atomic reference density files required
# Sequence: 8=Orbital composition analysis; 9=Calculate atom and
# fragment contributions by Becke method; 0=return to the
# previous menu
ORBITAL_COMPOSITION_BECKE = ("8", "9", "0")
# Modified LOBA (Localized Orbital Bonding Analysis): assigns formal
# oxidation states by analysing orbital-population partitioning among
# bonded atoms
# Sequence: 8=Orbital composition analysis; 100=Evaluate oxidation
# state by LOBA/mLOBA method; 0=return to the previous menu
LOBA_OXIDATION_STATE = ("8", "100", "0")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 9: Bond order analysis
# ─────────────────────────────────────────────────────────────────────────
# Prints bond orders between all atom pairs above a threshold, plus
# total and free valences for each atom. "0" returns to main menu.
# INTERACTIVE - REQUIRES USER INPUT
# Sequence: 9=Bond order analysis; 2=Multicenter bond order analysis;
# 0=answer '0' to the atom-index prompt (returns without a
# specific pair)
MULTICENTER_BOND_ORDER = ("9", "2", "0")
# Multi-centre bond order in the NAO basis (S becomes identity); much
# more basis-set stable, recommended when diffuse functions are
# present
# Sequence: 9=Bond order analysis; -2=Multicenter bond order analysis
# in NAO basis; 0=return to the previous menu
# INTERACTIVE ONLY -- requires natural population analysis (NPA) data
# to already be present in the input file
# (Multiwfn: 'Cannot find natural population
# analysis information in the input file'); fails
# with a plain .molden/.fch, needs e.g. an NBO-
# enabled Gaussian output instead
MULTICENTER_BOND_ORDER_NAO = ("9", "-2", "0")
# Wiberg bond order in the Lowdin-orthogonalised basis (WL); more
# stable than Mayer for large basis sets but can overestimate polar
# bonds Decompose Mulliken bond order between a chosen atom pair into
# per-orbital contributions to identify bonding vs. antibonding MOs
# Sequence: 9=Bond order analysis; 5=Decompose Mulliken bond order
# between two atoms to orbital contributions; 0=answer '0'
# to the atom-pair-index prompt (returns without a specific
# pair)
# INTERACTIVE ONLY -- requires an interactively-specified atom or ring
# index list (e.g. 'Input index of the atoms in
# ring order')
MULLIKEN_BOND_ORDER_DECOMPOSE = ("9", "5", "0")
# Orbital-occupancy-perturbed Mayer bond order: prints the
# contribution of each occupied MO to the Mayer bond order for a
# selected A-B pair
# Sequence: 9=Bond order analysis; 6=Orbital occupancy-perturbed Mayer
# bond order; 0=return to the previous menu
# INTERACTIVE ONLY -- requires an interactively-specified atom or ring
# index list (e.g. 'Input index of the atoms in
# ring order')
ORBITAL_PERTURBED_MAYER = ("9", "6", "0")
# Decompose Wiberg bond order between two atoms into per-orbital
# contributions; identifies which MOs are responsible for the bond
# Sequence: 9=Bond order analysis; 9=Decompose Wiberg bond order in
# NAO basis as atomic orbital pair contribution; 0=return to
# the previous menu
# KNOWN LIMITATION - requires natural population analysis (NAO) data
# to already be present in the input file; fails with a plain
# .molden/.fch that lacks NAO/NBO information.
WIBERG_DECOMPOSITION = ("9", "9", "0")
# AV1245 multicentric aromaticity index computed from Mayer bond
# orders along a ring; robust against ring size and basis-set choice
# Sequence: 9=Bond order analysis; 11=AV1245 index (approximate
# multicenter bond order for large rings) and AVmin;
# 0=return to the previous menu
# INTERACTIVE ONLY -- requires an interactively-specified atom or ring
# index list (e.g. 'Input index of the atoms in
# ring order')
AV1245_INDEX = ("9", "11", "0")
# Mayer bond orders from PS-matrix products; values approximately
# 1/2/3 for single/double/triple bonds; the best all-round bond-order
# method
# Sequence: 9=Bond order analysis; 1=Mayer bond order analysis; n=no
# (decline the fragment/mirror-plane restriction); 0=return
# to the previous menu
# KNOWN LIMITATION - on some input files this crashes inside
# Multiwfn's overlap-matrix orthogonalization/inversion step with a
# molecule-specific numerical error; not fixable client-side, the
# sequence itself is correct.
MAYER_BOND_ORDER = ("9", "1", "n", "0")
# Multi-centre bond order (up to 12 centres) in the original basis-
# function representation; sensitive to diffuse basis functions
# Sequence: 9=Bond order analysis; 3=Wiberg bond order analysis in
# Lowdin orthogonalized basis; n=no (decline the
# fragment/mirror-plane restriction); 0=return to the
# previous menu
# KNOWN LIMITATION - on some input files this crashes inside
# Multiwfn's overlap-matrix orthogonalization/inversion step with a
# molecule-specific numerical error; not fixable client-side, the
# sequence itself is correct.
WIBERG_BOND_ORDER = ("9", "3", "n", "0")
# Mulliken bond orders (2*PS off-diagonal elements); positive =
# bonding character, negative = antibonding; qualitative indicator
# only
# Sequence: 9=Bond order analysis; 4=Mulliken bond order (Mulliken
# overlap population) analysis; n=no (decline the
# fragment/mirror-plane restriction); 0=return to the
# previous menu
MULLIKEN_BOND_ORDER = ("9", "4", "n", "0")
# Fuzzy bond order (Becke-space integration of PS products); more
# basis-set stable than Mayer; essentially equivalent to the AIM
# delocalization index
# Sequence: 9=Bond order analysis; 7=Fuzzy bond order analysis (FBO);
# n=no (decline the fragment/mirror-plane restriction);
# 0=return to the previous menu
FUZZY_BOND_ORDER = ("9", "7", "n", "0")
# Laplacian Bond Order (LBO): integral of -nabla^2 rho in the fuzzy
# overlap space; correlates with BDE and vibrational frequency;
# independent of wavefunction type
# Sequence: 9=Bond order analysis; 8=Laplacian bond order (LBO); n=no
# (decline the fragment/mirror-plane restriction); 0=return
# to the previous menu
LAPLACIAN_BOND_ORDER = ("9", "8", "n", "0")
# Intrinsic Bond Strength Index (IBSI): geometry-free bond-order
# measure derived from the electron density at the bond critical point
# Sequence: 9=Bond order analysis; 10=Intrinsic bond strength index
# (IBSI); 1=Start calculation; 1=Medium quality (radial=30,
# angular=110. Cost=1.0 x); 0=return to the previous menu
IBSI_ANALYSIS = ("9", "10", "1", "1", "0")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 10: Density of states
# ─────────────────────────────────────────────────────────────────────────
# Reads orbital energies from .fch/.molden/Gaussian-output/plain-text
# and produces broadened TDOS, PDOS (per fragment), and OPDOS curves.
# Plot Total Density of States (TDOS): broadened orbital energy
# spectrum showing how densely electronic states are distributed in
# energy
# Sequence: 10=Plot total DOS, PDOS, OPDOS, local DOS, COHP and
# photoelectron spectrum; 0=Draw TDOS graph!; 2=Save the
# graph to image file in current folder; 3=Export curve and
# line data to plain text file in current folder; 0=return
# to the previous menu
PLOT_TDOS = ("10", "0", "2", "3", "0")
# Sequence: 10=Plot total DOS, PDOS, OPDOS, local DOS, COHP and
# photoelectron spectrum; 00=Draw TDOS and OPDOS between
# nearest atoms!; 2=Save the graph to image file in current
# folder; 3=Export curve and line data to plain text file in
# current folder; 0=return to the previous menu
PLOT_TDOS_OPDOS = ("10", "00", "2", "3", "0")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 11: Spectra simulation
# ─────────────────────────────────────────────────────────────────────────
# Reads transition data from Gaussian/ORCA output or plain-text files
# and broadens discrete transitions into simulated spectra using
# Gaussian, Lorentzian, or pseudo-Voigt broadening functions. Simulate
# IR absorption spectrum by broadening harmonic (or anharmonic)
# vibrational frequencies weighted by IR intensities in km/mol
# Sequence: 11=Plot IR/Raman/UV-Vis/ECD/VCD/ROA/NMR spectrum;
# 1=spectrum type 1: IR; 0=Plot spectrum! (compute and draw
# the curve); 1=Save graphical file of the spectrum in
# current folder
PLOT_IR_SPECTRUM = ("11", "1", "0", "1")
# Simulate Raman spectrum from Raman activities; optionally converts
# activities to intensities given a laser wavelength and temperature
# Sequence: 11=Plot IR/Raman/UV-Vis/ECD/VCD/ROA/NMR spectrum;
# 2=spectrum type 2: Raman (or pre-resonance Raman); 0=Plot
# spectrum! (compute and draw the curve); 1=Save graphical
# file of the spectrum in current folder
PLOT_RAMAN_SPECTRUM = ("11", "2", "0", "1")
# Simulate UV-Vis absorption spectrum by broadening TD-DFT/CIS
# excitation energies weighted by oscillator strengths; area
# calibrated to molar absorptivity
# Sequence: 11=Plot IR/Raman/UV-Vis/ECD/VCD/ROA/NMR spectrum;
# 3=spectrum type 3: UV-Vis; 0=Plot spectrum! (compute and
# draw the curve); 1=Save graphical file of the spectrum in
# current folder
PLOT_UV_VIS_SPECTRUM = ("11", "3", "0", "1")
# Simulate Electronic Circular Dichroism (ECD) spectrum from rotatory
# strengths in either length or velocity gauge representation
# Sequence: 11=Plot IR/Raman/UV-Vis/ECD/VCD/ROA/NMR spectrum;
# 4=spectrum type 4: ECD; 0=Plot spectrum! (compute and draw
# the curve); 1=Save graphical file of the spectrum in
# current folder
PLOT_ECD_SPECTRUM = ("11", "4", "0", "1")
# Simulate Vibrational Circular Dichroism (VCD) spectrum by broadening
# vibrational rotatory strengths
# Sequence: 11=Plot IR/Raman/UV-Vis/ECD/VCD/ROA/NMR spectrum;
# 5=spectrum type 5: VCD; 0=Plot spectrum! (compute and draw
# the curve); 1=Save graphical file of the spectrum in
# current folder
# INTERACTIVE ONLY -- requires vibrational frequency/intensity data (a
# Gaussian or ORCA frequency-job output) in the
# primary input file; crashes 'end-of-file during
# read' on the file itself when that data is
# absent, as in both bundled test files
# (coord.molden has no frequency job, tddft.out is
# a TD-DFT excited-state job with no Hessian)
PLOT_VCD_SPECTRUM = ("11", "5", "0", "1")
# Simulate Raman Optical Activity (ROA) spectrum from computed ROA
# intensities
# Sequence: 11=Plot IR/Raman/UV-Vis/ECD/VCD/ROA/NMR spectrum;
# 6=spectrum type 6: ROA; 0=Plot spectrum! (compute and draw
# the curve); 1=Save graphical file of the spectrum in
# current folder
PLOT_ROA_SPECTRUM = ("11", "6", "0", "1")
# Simulate NMR spectrum from calculated chemical shielding tensors;
# convert to chemical shifts by subtracting a reference shielding
# value
# Sequence: 11=Plot IR/Raman/UV-Vis/ECD/VCD/ROA/NMR spectrum;
# 7=spectrum type 7: NMR; 0=Plot spectrum! (compute and draw
# the curve); 1=Save graphical file of the spectrum in
# current folder
PLOT_NMR_SPECTRUM = ("11", "7", "0", "1")
# Simulate fluorescence/phosphorescence spectrum; applies Kasha rule
# so only the first excited state contributes when appropriate
# Sequence: 11=Plot IR/Raman/UV-Vis/ECD/VCD/ROA/NMR spectrum;
# 8=spectrum type 8: Fluorescence (undocumented in the
# printed menu, but accepted); 0=Plot spectrum! (compute and
# draw the curve); 1=Save graphical file of the spectrum in
# current folder
PLOT_FLUORESCENCE_SPECTRUM = ("11", "8", "0", "1")
# Plot photoelectron valence spectrum by broadening orbital ionisation
# energies; analogous to TDOS but focused on valence region
# Sequence: 11=Plot IR/Raman/UV-Vis/ECD/VCD/ROA/NMR spectrum;
# 9=spectrum type 9: PVS/photoelectron vibrational spectrum
# (undocumented, but accepted); 0=Plot spectrum! (compute
# and draw the curve); 1=Save graphical file of the spectrum
# in current folder
PLOT_PVS = ("11", "9", "0", "1")
# Predict the perceived colour of a compound from its computed UV-Vis
# absorption spectrum using CIE colour matching functions
# Sequence: 11=Plot IR/Raman/UV-Vis/ECD/VCD/ROA/NMR spectrum; 0=return
# to the previous menu
PREDICT_COLOR = ("11", "0")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 12: Quantitative molecular surface analysis
# ─────────────────────────────────────────────────────────────────────────
# Generates the rho = 0.001 a.u. vdW isosurface via Marching
# Tetrahedra, maps a chosen function onto it, and computes surface
# statistical descriptors (V_S, sigma^2, Pi, etc.) and locates surface
# extrema.
# Sequence: 12=Quantitative analysis of molecular surface; 0=Start
# analysis now!; -2=Export the grid data to surf.cub in
# current folder
QMSA_ESP = ("12", "0", "-2")
# Sequence: 12=Quantitative analysis of molecular surface; 2=Select
# mapped function, current: Electrostatic potential (ESP);
# 2=Average local ionization energy (ALIE); 0=Start analysis
# now!; -2=export the grid data to surf.cub
QMSA_ALIE = ("12", "2", "2", "0", "-2")
# Sequence: 12=Quantitative analysis of molecular surface; 2=Select
# mapped function, current: Electrostatic potential (ESP);
# 4=Local electron affinity (LEA); 0=Start analysis now!;
# -2=export the grid data to surf.cub
QMSA_LEA = ("12", "2", "4", "0", "-2")
# Sequence: 12=Quantitative analysis of molecular surface; 2=Select
# mapped function, current: Electrostatic potential (ESP);
# -4=Local electron attachment energy (LEAE); 0=Start
# analysis now!; -2=export the grid data to surf.cub
QMSA_LEAE = ("12", "2", "-4", "0", "-2")
# Sequence: 12=Quantitative analysis of molecular surface; 2=Select
# mapped function, current: Electrostatic potential (ESP);
# 5=Electron delocalization range function EDR(r;d); 0=Start
# analysis now!; -2=export the grid data to surf.cub
QMSA_EDR = ("12", "2", "5", "0", "-2")
# Sequence: 12=Quantitative analysis of molecular surface; 2=Select
# mapped function, current: Electrostatic potential (ESP);
# 6=Orbital overlap length function D(r) which maximizes
# EDR(r;d); 0=Start analysis now!; -2=export the grid data
# to surf.cub
QMSA_MAXEDR = ("12", "2", "6", "0", "-2")
# Sequence: 12=Quantitative analysis of molecular surface; 2=Select
# mapped function, current: Electrostatic potential (ESP);
# 11=Electron density; 0=Start analysis now!; -2=export the
# grid data to surf.cub
QMSA_EDENSITY = ("12", "2", "11", "0", "-2")
# Sequence: 12=Quantitative analysis of molecular surface; 2=Select
# mapped function, current: Electrostatic potential (ESP);
# 12=Sign(lambda2)*rho; 0=Start analysis now!; -2=export the
# grid data to surf.cub
QMSA_LAMBDA2_RHO = ("12", "2", "12", "0", "-2")
# DEPRECATED SEQUENCES - TO BE TESTED Map ESP onto the vdW surface
# (rho=0.001); compute V_S+, V_S-, sigma^2, Pi and locate surface ESP
# minima/maxima; outputs GIPF descriptors for property prediction
# Sequence: 12=Quantitative analysis of molecular surface; 0=Start
# analysis now!
SURFACE_ANALYSIS_ESP = ("12", "0")
# Map ALIE onto the vdW surface; locate surface minima which predict
# the most reactive electrophilic and radical attack sites
# Sequence: 12=Quantitative analysis of molecular surface; 2=Select
# mapped function, current: Electrostatic potential (ESP)
SURFACE_ANALYSIS_ALIE = ("12", "2")
# Compute the molecular vdW surface area and enclosed volume from the
# rho=0.001 isosurface
# Sequence: 12=Quantitative analysis of molecular surface; 3=Spacing
# of grid points for generating molecular surface;
# 0.25=explicit grid spacing in Bohr (same as the default,
# but set explicitly so the sequence is complete and
# reproducible rather than relying on whatever the current
# default happens to be); 6=Start analysis without
# considering mapped function; -1=return to the surface-
# analysis submenu after the post-processing menu; -1=return
# from there to the main menu
# FIXED - was ("12", "3") alone, which only opens the "Input a value
# (in Bohr)" grid-spacing sub-prompt and never actually runs the
# calculation. Verified against the real binary: after the analysis
# completes it drops into a "Post-processing menu" that needs two
# "-1" tokens to fully unwind back to the main menu before quitting.
SURFACE_AREA_VOLUME = ("12", "3", "0.25", "6", "-1", "-1")
# Becke-partition surface analysis: map a function onto each atomic
# Becke surface and compute per-atom surface descriptors
# Sequence: 12=Quantitative analysis of molecular surface; 4=Advanced
# options
BECKE_SURFACE = ("12", "4")
# Hirshfeld surface analysis for crystal packing studies: generate the
# Hirshfeld surface and compute shape-index, curvedness, and contact-
# distance properties
# Sequence: 12=Quantitative analysis of molecular surface; 5=Loading
# mapped function values from external file, current: No
HIRSHFELD_SURFACE = ("12", "5")
# Locate and list all local minima and maxima of the mapped function
# on the molecular surface, with their coordinates and values
# Sequence: 12=Quantitative analysis of molecular surface; 6=Start
# analysis without considering mapped function
SURFACE_EXTREMA = ("12", "6")
# Generate a Hirshfeld surface fingerprint plot (2D histogram of d_i
# vs. d_e distances); reveals intermolecular contact patterns in
# crystal structures
# Sequence: 12=Quantitative analysis of molecular surface; 5=Loading
# mapped function values from external file, current: No;
# 2=Similar to 1, but specific for the case of using cubegen
# utility of Gaussian
HIRSHFELD_SURFACE_FINGERPRINT = ("12", "5", "2")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 13: Process grid data
# ─────────────────────────────────────────────────────────────────────────
# Works on grid data already held in memory (from Menu 5 cube
# generation) or loaded from an external .cube/.grd file at startup.
# Export the current in-memory grid data to a Gaussian .cube file in
# the working directory
# Sequence: 13=Process grid data (No grid data is presented
# currently); 0=return to the previous menu
EXPORT_CUBE = ("13", "0")
# Export all grid-point coordinates together with their function
# values to plain-text file (output.txt)
# Sequence: 13=Process grid data (No grid data is presented
# currently); 1=export all grid points to a plain text file
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
EXPORT_GRID_ALL_POINTS = ("13", "1")
# Extract a 2D slice of the 3D grid in the XY plane at a user-
# specified Z index and save to a text file
# Sequence: 13=Process grid data (No grid data is presented
# currently); 2=extract the XY-plane slice of the grid
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
GRID_EXTRACT_PLANE_XY = ("13", "2")
# Extract a 2D slice of the 3D grid in the XZ plane at a user-
# specified Y index and save to a text file
# Sequence: 13=Process grid data (No grid data is presented
# currently); 3=extract the XZ-plane slice of the grid
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
GRID_EXTRACT_PLANE_XZ = ("13", "3")
# Extract a 2D slice of the 3D grid in the YZ plane at a user-
# specified X index and save to a text file
# Sequence: 13=Process grid data (No grid data is presented
# currently); 4=extract the YZ-plane slice of the grid
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
GRID_EXTRACT_PLANE_YZ = ("13", "4")
# Compute the planar average of grid values over all XY planes in a
# specified Z range; outputs a 1-D average profile along Z
# Sequence: 13=Process grid data (No grid data is presented
# currently); 5=average the grid along X and Y
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
GRID_AVERAGE_XY = ("13", "5")
# Compute the planar average of grid values over all XZ planes in a
# specified X range; outputs a 1-D average profile along X
# Sequence: 13=Process grid data (No grid data is presented
# currently); 6=average the grid along X and Z
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
GRID_AVERAGE_XZ = ("13", "6")
# Compute the planar average of grid values over all YZ planes in a
# specified Y range; outputs a 1-D average profile along Y
# Sequence: 13=Process grid data (No grid data is presented
# currently); 7=average the grid along Y and Z
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
GRID_AVERAGE_YZ = ("13", "7")
# Extract a 2D grid slice in the plane defined by the nuclear
# positions of three user-specified atoms
# Sequence: 13=Process grid data (No grid data is presented
# currently); 8=extract a plane defined by 3 atoms
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
GRID_EXTRACT_PLANE_3ATOMS = ("13", "8")
# Extract a 2D grid slice in the plane defined by three user-specified
# Cartesian coordinates
# Sequence: 13=Process grid data (No grid data is presented
# currently); 9=extract a plane defined by 3 points
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
GRID_EXTRACT_PLANE_3POINTS = ("13", "9")
# Export all grid points whose function value falls within a user-
# specified [min, max] interval
# Sequence: 13=Process grid data (No grid data is presented
# currently); 10=extract grid points within a value range
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
GRID_EXTRACT_VALUE_RANGE = ("13", "10")
# Perform element-wise arithmetic (+, -, *, /) between the current
# grid and a second cube file; used to construct difference densities,
# Fukui functions, etc.
# Sequence: 13=Process grid data (No grid data is presented
# currently); 11=perform math operations on two grid data
# sets
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
GRID_MATH_OPERATIONS = ("13", "11")
# Map function values from a second cube file onto the isosurface of
# the current grid (e.g., colour an ELF isosurface by ESP)
# Sequence: 13=Process grid data (No grid data is presented
# currently); 12=map the grid onto an isosurface
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
GRID_MAP_TO_ISOSURFACE = ("13", "12")
# Set all grid points farther than (or closer than) a distance cutoff
# from chosen atoms to a fixed value; used to mask unwanted isosurface
# regions
# Sequence: 13=Process grid data (No grid data is presented
# currently); 13=set grid values by distance to a reference
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
GRID_SET_VALUE_DISTANCE = ("13", "13")
# Set grid points outside the fuzzy overlap region of two user-defined
# fragments to a fixed value; isolates the inter-fragment interaction
# zone
# Sequence: 13=Process grid data (No grid data is presented
# currently); 14=set grid values by fragment membership
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
GRID_SET_VALUE_FRAGMENT = ("13", "14")
# Replace all grid values within a specified numerical range with a
# single fixed value; applies thresholding or clamping to the data
# Sequence: 13=Process grid data (No grid data is presented
# currently); 15=set grid values within a range
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
GRID_SET_VALUE_RANGE = ("13", "15")
# Linearly rescale all grid values from their current [min, max] to a
# user- specified [new_min, new_max]
# Sequence: 13=Process grid data (No grid data is presented
# currently); 16=rescale the grid's value range
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
GRID_SCALE_RANGE = ("13", "16")
# Print statistics (min, max, mean, std dev, and spatial integral) for
# grid points in a user-defined spatial and/or value range
# Sequence: 13=Process grid data (No grid data is presented
# currently); 17=print statistics of the grid data
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
GRID_STATISTIC_DATA = ("13", "17")
# Compute and plot the running integral of the grid data along X, Y,
# or Z; useful for generating charge-displacement curves in EDA
# Sequence: 13=Process grid data (No grid data is presented
# currently); 18=plot the integral curve of the grid data
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
GRID_PLOT_INTEGRAL_CURVE = ("13", "18")
# Open the interactive GUI to visualise the isosurface of the
# currently loaded grid data at an adjustable isovalue slider
# Sequence: 13=Process grid data (No grid data is presented
# currently); -2=visualize the grid as an isosurface
# INTERACTIVE ONLY -- requires grid data from a prior cube-generation
# step in the same session (Multiwfn: 'Grid data
# has not been loaded or generated'); not a
# standalone zero-interaction action
GRID_VISUALIZE_ISOSURFACE = ("13", "-2")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 14: Adaptive Natural Density Partitioning (AdNDP)
# ─────────────────────────────────────────────────────────────────────────
# Decomposes the electron density into n-centre two-electron (nc-2e)
# bonding elements interactively; visualises results in Multiwfn GUI.
# NEED SPECIFIC FILE Launch the AdNDP interactive interface to search
# for 1c-2e lone pairs, 2c-2e bonds, and multi-centre bonding
# elements; widely used for cluster and aromatic-system bonding
# analysis
# Sequence: 14=Adaptive natural density partitioning (AdNDP) analysis
# INTERACTIVE ONLY -- requires natural population analysis (NPA) data
# to already be present in the input file
# (Multiwfn: 'Cannot find natural population
# analysis information in the input file'); fails
# with a plain .molden/.fch, needs e.g. an NBO-
# enabled Gaussian output instead
ADNDP_ANALYSIS = ("14",)
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 15: Fuzzy atomic space analysis
# ─────────────────────────────────────────────────────────────────────────
# Numerical integration of real-space functions in Becke or Hirshfeld
# fuzzy atomic spaces; computes delocalization indices and
# aromaticity.
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function; 1=Electron
# density (rho)
FUZZY_INTEGRATE_EDENSITY = ("15", "1", "1")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function; 2=Gradient
# norm of rho
FUZZY_INTEGRATE_NORM_RHO = ("15", "1", "2")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function; 3=Laplacian
# of rho
FUZZY_INTEGRATE_LAPLACIAN = ("15", "1", "3")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function; 4=Value of
# orbital wavefunction; h=select the HOMO
FUZZY_INTEGRATE_ORB_WFN_HOMO = ("15", "1", "4", "h")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function; 4=Value of
# orbital wavefunction; l=select the LUMO
FUZZY_INTEGRATE_ORB_WFN_LUMO = ("15", "1", "4", "l")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function; 5=Electron
# spin density
FUZZY_INTEGRATE_ESPIN_DENSITY = ("15", "1", "5")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function;
# 6=Hamiltonian kinetic energy density K(r)
FUZZY_INTEGRATE_KR = ("15", "1", "6")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function;
# 7=Lagrangian kinetic energy density G(r)
FUZZY_INTEGRATE_GR = ("15", "1", "7")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function;
# 8=Electrostatic potential from nuclear charges
FUZZY_INTEGRATE_ESP_CHARGES = ("15", "1", "8")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function; 9=Electron
# localization function (ELF)
FUZZY_INTEGRATE_ELF = ("15", "1", "9")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function;
# 10=Localized orbital locator (LOL)
FUZZY_INTEGRATE_LOL = ("15", "1", "10")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function; 11=Local
# information entropy
FUZZY_INTEGRATE_LOCAL_ENTROPY = ("15", "1", "11")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function; 12=Total
# electrostatic potential (ESP)
FUZZY_INTEGRATE_ESP = ("15", "1", "12")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function; 13=Reduced
# density gradient (RDG)
FUZZY_INTEGRATE_RDG = ("15", "1", "13")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function; 14=RDG with
# promolecular approximation
FUZZY_INTEGRATE_RDG_PROMOLECULAR = ("15", "1", "14")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function;
# 15=Sign(lambda2)*rho
FUZZY_INTEGRATE_LAMBDA2RHO = ("15", "1", "15")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function;
# 16=Sign(lambda2)*rho with promolecular approximation
FUZZY_INTEGRATE_LAMBDA2RGO_PROMOLECULAR = ("15", "1", "16")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function; 18=Average
# local ionization energy (ALIE)
FUZZY_INTEGRATE_ALIE = ("15", "1", "18")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function; 20=Electron
# delocal. range func. EDR(r;d)
FUZZY_INTEGRATE_EDR = ("15", "1", "20")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function; 21=Orbital
# overlap dist. func. D(r)
FUZZY_INTEGRATE_ORB_OVERLAP_DR = ("15", "1", "21")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function; 22=Delta-g
# (promolecular approximation)
FUZZY_INTEGRATE_DELTAG_PROMOLECULAR = ("15", "1", "22")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function; 23=Delta-g
# (Hirshfeld partition)
FUZZY_INTEGRATE_DELTAG_HIRSHFELD = ("15", "1", "23")
# Sequence: 15=Fuzzy atomic space analysis; 1=Perform integration in
# fuzzy atomic spaces for a real space function;
# 24=Interaction region indicator (IRI)
FUZZY_INTEGRATE_IRI = ("15", "1", "24")
# Sequence: 15=Fuzzy atomic space analysis; 2=Calculate atomic and
# molecular multipole moments and <r^2>; 1=output the result
# on screen (not to multipole.txt)
FUZZY_MULTIPOLE = ("15", "2", "1")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions;
# 1=Electron density (rho); n=no (decline the
# fragment/mirror-plane restriction); 0=return to the main
# menu after the "output to intovlp.txt?" prompt
# FIXED - the trailing "0" (shared by the whole FUZZY_OVERLAP_*
# family below) was missing; verified against the real binary that
# without it the run crashes with a Fortran list-directed I/O error
# on quit, because it's left one submenu level short of the main
# menu.
FUZZY_OVERLAP_EDENSITY = ("15", "8", "1", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions;
# 2=Norm of gradient of rho; n=no (decline the
# fragment/mirror-plane restriction)
# FIXED - was ("15", "8", "1", "n"), identical to FUZZY_OVERLAP_EDENSITY's
# value tuple. Two Menu members sharing an identical value tuple become
# the SAME enum object in Python, so FUZZY_OVERLAP_NORM_RHO silently
# aliased to FUZZY_OVERLAP_EDENSITY (option 1, electron density) instead
# of selecting option 2 (norm of gradient of rho).
FUZZY_OVERLAP_NORM_RHO = ("15", "8", "2", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions;
# 3=Laplacian of rho; n=no (decline the
# fragment/mirror-plane restriction)
FUZZY_OVERLAP_LAPLACIAN = ("15", "8", "3", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions; 4=Value
# of orbital wavefunction; h=select the HOMO; n=no (decline
# the fragment/mirror-plane restriction)
FUZZY_OVERLAP_ORB_WFN_HOMO = ("15", "8", "4", "h", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions; 4=Value
# of orbital wavefunction; l=select the LUMO; n=no (decline
# the fragment/mirror-plane restriction)
FUZZY_OVERLAP_ORB_WFN_LUMO = ("15", "8", "4", "l", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions;
# 5=Electron spin density; n=no (decline the
# fragment/mirror-plane restriction)
FUZZY_OVERLAP_ESPIN_DENSITY = ("15", "8", "5", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions;
# 6=Hamiltonian kinetic energy density K(r); n=no (decline
# the fragment/mirror-plane restriction)
FUZZY_OVERLAP_KR = ("15", "8", "6", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions;
# 7=Lagrangian kinetic energy density G(r); n=no (decline
# the fragment/mirror-plane restriction)
FUZZY_OVERLAP_GR = ("15", "8", "7", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions;
# 8=Electrostatic potential from nuclear charges; n=no
# (decline the fragment/mirror-plane restriction)
FUZZY_OVERLAP_ESP_CHARGES = ("15", "8", "8", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions;
# 9=Electron localization function (ELF); n=no (decline the
# fragment/mirror-plane restriction)
FUZZY_OVERLAP_ELF = ("15", "8", "9", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions;
# 10=Localized orbital locator (LOL); n=no (decline the
# fragment/mirror-plane restriction)
FUZZY_OVERLAP_LOL = ("15", "8", "10", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions; 11=Local
# information entropy; n=no (decline the
# fragment/mirror-plane restriction)
FUZZY_OVERLAP_LOCAL_ENTROPY = ("15", "8", "11", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions; 12=Total
# electrostatic potential (ESP); n=no (decline the
# fragment/mirror-plane restriction)
FUZZY_OVERLAP_ESP = ("15", "8", "12", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions;
# 13=Reduced density gradient (RDG); n=no (decline the
# fragment/mirror-plane restriction)
FUZZY_OVERLAP_RDG = ("15", "8", "13", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions; 14=RDG
# with promolecular approximation; n=no (decline the
# fragment/mirror-plane restriction)
FUZZY_OVERLAP_RDG_PROMOLECULAR = ("15", "8", "14", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions;
# 15=Sign(lambda2)*rho; n=no (decline the
# fragment/mirror-plane restriction)
FUZZY_OVERLAP_LAMBDA2RHO = ("15", "8", "15", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions;
# 16=Sign(lambda2)*rho with promolecular approximation; n=no
# (decline the fragment/mirror-plane restriction)
FUZZY_OVERLAP_LAMBDA2RGO_PROMOLECULAR = ("15", "8", "16", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions;
# 18=Average local ionization energy (ALIE); n=no (decline
# the fragment/mirror-plane restriction)
FUZZY_OVERLAP_ALIE = ("15", "8", "18", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions;
# 20=Electron delocal. range func. EDR(r;d); n=no (decline
# the fragment/mirror-plane restriction)
FUZZY_OVERLAP_EDR = ("15", "8", "20", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions;
# 21=Orbital overlap dist. func. D(r); n=no (decline the
# fragment/mirror-plane restriction)
FUZZY_OVERLAP_ORB_OVERLAP_DR = ("15", "8", "21", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions;
# 22=Delta-g (promolecular approximation); n=no (decline the
# fragment/mirror-plane restriction)
FUZZY_OVERLAP_DELTAG_PROMOLECULAR = ("15", "8", "22", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions;
# 23=Delta-g (Hirshfeld partition); n=no (decline the
# fragment/mirror-plane restriction)
FUZZY_OVERLAP_DELTAG_HIRSHFELD = ("15", "8", "23", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 8=Perform integration in
# fuzzy overlap region for a real space functions;
# 24=Interaction region indicator (IRI); n=no (decline the
# fragment/mirror-plane restriction)
FUZZY_OVERLAP_IRI = ("15", "8", "24", "n", "0")
# Sequence: 15=Fuzzy atomic space analysis; 9=Calculate condensed
# linear response kernel (CLRK); n=no (decline the
# fragment/mirror-plane restriction)
CLRK_MATRIX = ("15", "9", "n")
# Compute the Atomic Overlap Matrix (AOM) S_AB = integral(psi_i *
# psi_j * w_A) dr; required input for NOCV, ETS-NOCV, and
# delocalization-index calculations
# Sequence: 15=Fuzzy atomic space analysis; 3=Calculate and output
# atomic overlap matrix (AOM) in current folder
ATOMIC_OVERLAP_MATRIX = ("15", "3")
# Compute localization index and pairwise delocalization index (DI)
# for all atom pairs in fuzzy spaces; DI is a bond-order analogue
# grounded in density-matrix theory
# Sequence: 15=Fuzzy atomic space analysis; 4=Calculate localization
# (LI) and delocalization index (DI); n=no (decline the
# fragment/mirror-plane restriction)
LOCALIZATION_DELOCALIZATION_INDEX = ("15", "4", "n")
# Para Delocalization Index (PDI): average DI between para-related
# carbon atoms in a 6-membered ring; larger PDI indicates stronger
# aromaticity
# Sequence: 15=Fuzzy atomic space analysis; 5=Calculate PDI
# (Para-delocalization index); q=quit / return without
# change
PDI_AROMATICITY = ("15", "5", "q")
# Aromatic Fluctuation Index (FLU): measures deviation of DI from
# reference bond values; value near 0 indicates a fully aromatic ring
# Sequence: 15=Fuzzy atomic space analysis; 6=Calculate FLU (Aromatic
# fluctuation index); q=quit / return without change
FLU_AROMATICITY = ("15", "6", "q")
# FLU-pi: FLU computed using only pi-orbital contributions to the
# delocalization index; more selective for pi-electron aromaticity
# INTERACTIVE - REQUIRES USER INPUT
# Sequence: 15=Fuzzy atomic space analysis; 7=Calculate FLU-pi
FLU_PI_AROMATICITY = ("15", "7")
# Compute the condensed linear response kernel chi_AB; measures how
# much electron density at atom B responds to an external perturbation
# at atom A
# Sequence: 15=Fuzzy atomic space analysis; 9=Calculate condensed
# linear response kernel (CLRK)
CONDENSED_LINEAR_RESPONSE = ("15", "9")
# Compute the para linear response (PLR) aromaticity index from the
# condensed linear response kernel; large PLR indicates strong
# aromatic delocalization
# Sequence: 15=Fuzzy atomic space analysis; 10=Calculate PLR (Para
# linear response index); q=quit / return without change
PARA_LINEAR_RESPONSE = ("15", "10", "q")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 16: Charge Decomposition Analysis (CDA)
# ─────────────────────────────────────────────────────────────────────────
# Generalised CDA (GCDA): decomposes orbital interactions between two
# or more fragments into donation, back-donation, repulsion, and
# residual. INTERACTIVE Launch the CDA/GCDA: decompose charge transfer
# between fragments into donation (d), back-donation (b), repulsion
# (r), and residual (Delta) terms; plot the orbital interaction
# diagram INTERACTIVE - REQUIRES USER INPUT
# Sequence: 16=Charge decomposition analysis (CDA) and plot orbital
# interaction diagram
# INTERACTIVE ONLY -- requires interactively defining one or more atom
# fragments ('How many fragments...'); can't be
# filled with a fixed default
CDA_ANALYSIS = ("16",)
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 17: Basin analysis
# ─────────────────────────────────────────────────────────────────────────
# Locates attractors of a real-space function and builds gradient-
# following basins around them.
# NOTE: the entries below only run the generation step (locate
# attractors, build basins) and verified against the real binary to
# complete cleanly; the actual property-integration step ("2
# Integrate real space functions in the basins" in the post-
# generation submenu) is a separate, much slower operation (100s of
# seconds per function) that is not wired into these sequences.
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 1=Electron density (rho); 2=Medium quality
# grid, spacing=0.10 Bohr, cost: 8x
BASIN_ANALYSIS_RHO = ("17", "1", "1", "2", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 1=Electron density (rho); 1=Low quality grid,
# spacing=0.20 Bohr, cost: 1x
BASIN_EDENSITY = ("17", "1", "1", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 2=Gradient norm of rho; 1=Low quality grid,
# spacing=0.20 Bohr, cost: 1x (kept low given basin
# generation/integration cost, see BASIN_ANALYSIS_RHO)
# FIXED - was ("17", "1", "2", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_NORM_RHO = ("17", "1", "2", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 3=Laplacian of rho; 1=Low quality grid,
# spacing=0.20 Bohr, cost: 1x
# FIXED - was ("17", "1", "3", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_LAPLACIAN = ("17", "1", "3", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 4=Value of orbital wavefunction; h=select the
# HOMO; 1=Low quality grid, spacing=0.20 Bohr,
# cost: 1x
# FIXED - was ("17", "1", "4", "h", "n") alone, which only opens the
# grid-quality sub-prompt and leaves it waiting for interactive input,
# so basin generation never actually runs.
BASIN_ORB_WFN_HOMO = ("17", "1", "4", "h", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 4=Value of orbital wavefunction; l=select the
# LUMO; 1=Low quality grid, spacing=0.20 Bohr,
# cost: 1x
# FIXED - was ("17", "1", "4", "l", "n") alone, which only opens the
# grid-quality sub-prompt and leaves it waiting for interactive input,
# so basin generation never actually runs.
BASIN_ORB_WFN_LUMO = ("17", "1", "4", "l", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 5=Electron spin density; 1=Low quality grid,
# spacing=0.20 Bohr, cost: 1x
# FIXED - was ("17", "1", "5", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_ESPIN_DENSITY = ("17", "1", "5", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 6=Hamiltonian kinetic energy density K(r);
# 1=Low quality grid, spacing=0.20 Bohr, cost: 1x
# FIXED - was ("17", "1", "6", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_KR = ("17", "1", "6", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 7=Lagrangian kinetic energy density G(r); 1=Low
# quality grid, spacing=0.20 Bohr, cost: 1x
# FIXED - was ("17", "1", "7", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_GR = ("17", "1", "7", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 8=Electrostatic potential from nuclear
# charges; 1=Low quality grid, spacing=0.20 Bohr,
# cost: 1x
# FIXED - was ("17", "1", "8", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_ESP_CHARGES = ("17", "1", "8", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 9=Electron localization function (ELF); 1=Low
# quality grid, spacing=0.20 Bohr, cost: 1x
# FIXED - was ("17", "1", "9", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_ELF = ("17", "1", "9", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 10=Localized orbital locator (LOL); 1=Low
# quality grid, spacing=0.20 Bohr, cost: 1x
# FIXED - was ("17", "1", "10", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_LOL = ("17", "1", "10", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 11=Local information entropy; 1=Low quality
# grid, spacing=0.20 Bohr, cost: 1x
# FIXED - was ("17", "1", "11", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_LOCAL_ENTROPY = ("17", "1", "11", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 12=Total electrostatic potential (ESP); 1=Low
# quality grid, spacing=0.20 Bohr, cost: 1x
# FIXED - was ("17", "1", "12", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_ESP = ("17", "1", "12", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 13=Reduced density gradient (RDG); 1=Low
# quality grid, spacing=0.20 Bohr, cost: 1x
# FIXED - was ("17", "1", "13", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_RDG = ("17", "1", "13", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 14=RDG with promolecular approximation; 1=Low
# quality grid, spacing=0.20 Bohr, cost: 1x
# FIXED - was ("17", "1", "14", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_RDG_PROMOLECULAR = ("17", "1", "14", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 15=Sign(lambda2)*rho; 1=Low quality grid,
# spacing=0.20 Bohr, cost: 1x
# FIXED - was ("17", "1", "15", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_LAMBDA2RHO = ("17", "1", "15", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 16=Sign(lambda2)*rho with promolecular
# approximation; 1=Low quality grid, spacing=0.20 Bohr,
# cost: 1x
# FIXED - was ("17", "1", "16", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_LAMBDA2RGO_PROMOLECULAR = ("17", "1", "16", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 18=Average local ionization energy (ALIE);
# 1=Low quality grid, spacing=0.20 Bohr, cost: 1x
# FIXED - was ("17", "1", "18", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_ALIE = ("17", "1", "18", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 20=Electron delocal. range func. EDR(r;d);
# 1=Low quality grid, spacing=0.20 Bohr, cost: 1x
# FIXED - was ("17", "1", "20", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_EDR = ("17", "1", "20", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 21=Orbital overlap dist. func. D(r); 1=Low
# quality grid, spacing=0.20 Bohr, cost: 1x
# FIXED - was ("17", "1", "21", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_ORB_OVERLAP_DR = ("17", "1", "21", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 22=Delta-g (promolecular approximation); 1=Low
# quality grid, spacing=0.20 Bohr, cost: 1x
# FIXED - was ("17", "1", "22", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_DELTAG_PROMOLECULAR = ("17", "1", "22", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 23=Delta-g (Hirshfeld partition); 1=Low
# quality grid, spacing=0.20 Bohr, cost: 1x
# FIXED - was ("17", "1", "23", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs.
BASIN_DELTAG_HIRSHFELD = ("17", "1", "23", "1", "-10")
# Sequence: 17=Basin analysis; 1=Generate basins and locate
# attractors; 24=Interaction region indicator (IRI); 1=Low
# quality grid, spacing=0.20 Bohr, cost: 1x
# FIXED - was ("17", "1", "24", "n") alone, which only opens the grid-
# quality sub-prompt and leaves it waiting for interactive input, so
# basin generation never actually runs; 1=Low quality grid,
# spacing=0.20 Bohr, cost: 1x
BASIN_IRI = ("17", "1", "24", "1", "-10")
# AIM basin analysis: attractors are nuclei; integrates rho in each
# QTAIM atomic basin to yield Bader/AIM charges, atomic multipoles,
# LI, and DI
# Sequence: 17=Basin analysis; 1=Generate basins and locate attractors
BASIN_ANALYSIS_AIM = ("17", "1")
# ELF basin analysis: finds ELF attractors (bonding pairs, lone pairs,
# core shells) and integrates rho per basin to obtain basin electron
# populations
# Sequence: 17=Basin analysis; 2=Topology analysis
BASIN_ANALYSIS_ELF = ("17", "2")
# Integrate any user-chosen real-space function over basins that have
# already been generated in the current Multiwfn session
# Sequence: 17=Basin analysis; 3=Output and plot specific property in
# a line
BASIN_INTEGRATE_PROPERTY = ("17", "3")
# ESP basin analysis: ESP minima serve as attractors; integrates rho
# in corresponding basins to characterise nucleophilic pockets and
# lone-pair regions
# Sequence: 17=Basin analysis; 4=Output and plot specific property in
# a plane
BASIN_ANALYSIS_ESP = ("17", "4")
# LOL basin analysis: LOL maxima serve as attractors (bonding and
# lone-pair regions); integrates rho for sharp-boundary basin
# populations
# Sequence: 17=Basin analysis; 5=Output and plot specific property
# within a spatial region (calc. grid data)
BASIN_ANALYSIS_LOL = ("17", "5")
# LOL-alpha basin analysis restricted to alpha-spin electrons;
# isolates pi- electron basins for aromaticity and pi-conjugation
# studies
# Sequence: 17=Basin analysis; 6=Check & modify wavefunction
BASIN_ANALYSIS_LOL_ALPHA = ("17", "6")
# Basin analysis using a user-defined real-space function specified
# via the iuserfunc parameter in settings.ini
# Sequence: 17=Basin analysis; 0=Show molecular structure and view
# orbitals
BASIN_ANALYSIS_CUSTOM = ("17", "0")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 18: Electron excitation analysis
# ─────────────────────────────────────────────────────────────────────────
# Analyses TD-DFT/CIS excited states loaded from Gaussian or ORCA
# output. Analyse hole and electron density distributions for a TD-DFT
# transition: compute centroid distance, t index, and Sr overlap
# integral; visualise hole/electron isosurfaces
# Sequence: 18=Electron excitation analysis; 1=Analyze and visualize
# hole&electron distribution, transition density, and
# transition electric/magnetic dipole moment density
HOLE_ELECTRON_ANALYSIS = ("18", "1")
# Plot the transition density matrix as a colour-filled 2D map in the
# atom- atom/MO-MO representation; reveals coherence length and
# charge-transfer character
# Sequence: 18=Electron excitation analysis; 2=Plot atom/fragment
# transition matrix of various kinds as heat map
# INTERACTIVE ONLY -- requires the path to a separate external file
# (not the primary wavefunction) -- e.g. a
# Gaussian/ORCA output, a cube file, or an NBO
# file
TRANSITION_DENSITY_MATRIX = ("18", "2")
# Analyse charge transfer from an electron-density-difference grid:
# compute CT distance, amount of transferred charge per fragment using
# the Plasser- Lischka method
# Sequence: 18=Electron excitation analysis; 3=Analyze charge-transfer
# based on density difference grid data (JCTC,7,2498)
CHARGE_TRANSFER_ANALYSIS = ("18", "3")
# Compute the Delta_r index (charge-transfer length) for each excited
# state to quantify local (small Delta_r) vs. charge-transfer (large
# Delta_r) excitation character
# Sequence: 18=Electron excitation analysis; 4=Calculate delta_r index
# to measure charge-transfer length (JCTC,9,3118)
# INTERACTIVE ONLY -- requires the path to a separate external file
# (not the primary wavefunction) -- e.g. a
# Gaussian/ORCA output, a cube file, or an NBO
# file
DELTA_R_INDEX = ("18", "4")
# Calculate and print transition electric (and optionally magnetic)
# dipole moments between all pairs of excited states in the loaded TD-
# DFT output
# Sequence: 18=Electron excitation analysis; 5=Calculate transition
# electric/magnetic dipole moments between all states and
# for each state
# INTERACTIVE ONLY -- requires the path to a separate external file
# (not the primary wavefunction) -- e.g. a
# Gaussian/ORCA output, a cube file, or an NBO
# file
TRANSITION_DIPOLE_MOMENTS = ("18", "5")
# Generate Natural Transition Orbitals (NTOs) for a chosen excitation;
# the dominant particle-hole NTO pair visually captures the essential
# character of the transition
# Sequence: 18=Electron excitation analysis; 6=Generate natural
# transition orbitals (NTOs)
GENERATE_NTO = ("18", "6")
# Inter-Fragment Charge Transfer (IFCT): quantify hole and electron
# populations transferred between user-defined fragments upon
# photoexcitation
# Sequence: 18=Electron excitation analysis; 8=Calculate interfragment
# charge transfer via IFCT method
IFCT_ANALYSIS = ("18", "8")
# Compute the Lambda diagnostic for each TD-DFT transition; Lambda <
# 0.3 flags charge-transfer states that may be poorly described by
# standard functionals
# Sequence: 18=Electron excitation analysis; 14=Calculate lambda index
# to characterize electron excitation (JCP,128,044118)
LAMBDA_INDEX = ("18", "14")
# Charge Transfer Spectrum (CTS): run batch IFCT over all excited
# states, then plot the result as an inter-fragment CT contribution
# spectrum
# Sequence: 18=Electron excitation analysis; 16=Charge-transfer
# spectrum (CTS) analysis (Carbon,187,78)
# INTERACTIVE ONLY -- requires interactively defining one or more atom
# fragments ('How many fragments...'); can't be
# filled with a fixed default
CTS_ANALYSIS = ("18", "16")
# Compute the conditional electron density: given one electron is
# fixed at reference point r0, maps the conditional probability of
# finding a second electron at r
# Sequence: 18=Electron excitation analysis; 17=Electron density
# polarization analysis based on electron excitations
CONDITIONAL_DENSITY = ("18", "17")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 19: Orbital localization
# ─────────────────────────────────────────────────────────────────────────
# Transforms canonical delocalized MOs into spatially localised MOs
# for chemical interpretation as bonds, lone pairs, and core orbitals.
# Sequence: 19=Orbital localization analysis; 1=Localizing occupied
# orbitals only
PIPEK_MEZEY_LOCALIZATION_HIRSHFELD_OCCUPIED = ("19", "1")
# Sequence: 19=Orbital localization analysis; 2=Localizing both
# occupied and unoccupied orbitals separately
PIPEK_MEZEY_LOCALIZATION_HIRSHFELD_ALL = ("19", "2")
# Sequence: 19=Orbital localization analysis; -6=Set localization
# method, current: Pipek-Mezey with Mulliken population;
# 2=Pipek-Mezey based on Lowdin type of population;
# 1=Localizing occupied orbitals only
# INTERACTIVE ONLY -- CRASHES this Multiwfn 3.8(dev) build with
# SIGSEGV after 'Calculating orbital
# compositions...' following localization --
# appears to be a genuine bug in this build, not a
# sequence issue
PIPEK_MEZEY_LOCALIZATION_LOWDIN_OCUPIED = ("19", "-6", "2", "1")
# Sequence: 19=Orbital localization analysis; -6=Set localization
# method, current: Pipek-Mezey with Mulliken population;
# 2=Pipek-Mezey based on Lowdin type of population;
# 2=Localizing both occupied and unoccupied orbitals
# separately
# INTERACTIVE ONLY -- CRASHES this Multiwfn 3.8(dev) build with
# SIGSEGV after 'Calculating orbital
# compositions...' following localization --
# appears to be a genuine bug in this build, not a
# sequence issue
PIPEK_MEZEY_LOCALIZATION_LOWDIN_ALL = ("19", "-6", "2", "2")
# Sequence: 19=Orbital localization analysis; -6=Set localization
# method, current: Pipek-Mezey with Mulliken population;
# 3=Pipek-Mezey based on Becke population; 1=Localizing
# occupied orbitals only
# INTERACTIVE ONLY -- CRASHES this Multiwfn 3.8(dev) build with
# SIGSEGV after 'Calculating orbital
# compositions...' following localization --
# appears to be a genuine bug in this build, not a
# sequence issue
PIPEK_MEZEY_LOCALIZATION_BECKE_OCCUPIED = ("19", "-6", "3", "1")
# Sequence: 19=Orbital localization analysis; -6=Set localization
# method, current: Pipek-Mezey with Mulliken population;
# 3=Pipek-Mezey based on Becke population; 2=Localizing both
# occupied and unoccupied orbitals separately
PIPEK_MEZEY_LOCALIZATION_BECKE_ALL = ("19", "-6", "3", "2")
# Sequence: 19=Orbital localization analysis; -6=Set localization
# method, current: Pipek-Mezey with Mulliken population;
# 10=Foster-Boys; 1=Localizing occupied orbitals only
# INTERACTIVE ONLY -- CRASHES this Multiwfn 3.8(dev) build with
# SIGSEGV after 'Calculating orbital
# compositions...' following localization --
# appears to be a genuine bug in this build, not a
# sequence issue
BOYS_LOCALIZATION_OCCUPIED = ("19", "-6", "10", "1")
# Sequence: 19=Orbital localization analysis; -6=Set localization
# method, current: Pipek-Mezey with Mulliken population;
# 10=Foster-Boys; 2=Localizing both occupied and unoccupied
# orbitals separately
BOYS_LOCALIZATION_ALL = ("19", "-6", "10", "2")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 20: Weak interaction analysis
# ─────────────────────────────────────────────────────────────────────────
# Methods based on the Reduced Density Gradient (RDG) and related
# functions to visualise and quantify non-covalent interactions (NCI).
# NCI analysis from wavefunction: generate RDG and sign(lambda2)*rho
# cubes; render RDG isosurface coloured by sign(lambda2)*rho in VMD to
# visualise H-bonds, vdW contacts, and steric clashes
# Sequence: 20=Visual study of weak interaction; 1=NCI analysis (also
# known as RDG analysis); 2=Medium quality grid, covering
# whole system, about 512000 points in total; 2=Output
# scatter points to output.txt in current folder; 3=Output
# cube files to func1.cub and func2.cub in current folder;
# 0=Start analysis now!; 0=return to the previous menu
NCI_ANALYSIS = ("20", "1", "2", "2", "3", "0", "0")
# Promolecular NCI: same as NCI but built from superposition of free-
# atom densities; very fast and suitable for macromolecules and
# protein-ligand binding without a full wavefunction
# Sequence: 20=Visual study of weak interaction; 2=NCI analysis based
# on promolecular density; 2=Medium quality grid, covering
# whole system, about 512000 points in total; 2=Output
# scatter points to output.txt in current folder; 3=export
# cube files to func1.cub/func2.cub; 0=Start analysis now!;
# 0=return to the previous menu
NCI_PROMOLECULAR = ("20", "2", "2", "2", "3", "0", "0")
# Interaction Region Indicator (IRI): improved NCI variant that decays
# smoothly at atomic cores and better resolves weak intermolecular
# contacts recommended over standard RDG
# Sequence: 20=Visual study of weak interaction; 4=IRI: Interaction
# region indicator analysis (Chemistry-Methods, 1, 231);
# 2=Medium quality grid, covering whole system, about 512000
# points in total; 1=Save the scatter graph to file;
# 2=Output scatter points to output.txt in current folder;
# 3=export cube files to func1.cub/func2.cub; 0=Start
# analysis now!; 0=return to the previous menu
IRI_ANALYSIS = ("20", "4", "2", "1", "2", "3", "0", "0")
# Density Overlap Regions Indicator (DORI): highlights regions where
# two electron densities overlap, clearly revealing both covalent and
# non- covalent interaction zones
# Sequence: 20=Visual study of weak interaction; 5=DORI analysis;
# 2=Medium quality grid, covering whole system, about 512000
# points in total; 1=real-space function: sign(lambda2)*rho
# (paired with EDR); 2=medium-quality grid; 3=export cube
# files to func1.cub/func2.cub; 0=Start analysis now!;
# 0=return to the previous menu
DORI_ANALYSIS = ("20", "5", "2", "1", "2", "3", "0", "0")
# Compute and visualise the van der Waals interaction potential
# landscape around the molecule
# Sequence: 20=Visual study of weak interaction; 6=Visualization of
# van der Waals potential (JMM, 26, 315); 2=Medium quality
# grid, covering whole system, about 512000 points in total;
# 1=Show isosurface graph of repulsion potential; 2=Show
# isosurface graph of dispersion potential; 3=Show
# isosurface graph of van der Waals potential; 0=Start
# analysis now!; 0=return to the previous menu
VDW_POTENTIAL = ("20", "6", "2", "1", "2", "3", "0", "0")
# Averaged NCI (ANCI): NCI analysis averaged over an ensemble of MD
# trajectory snapshots; reveals which non-covalent interactions
# persist statistically over time INTERACTIVE - REQUIRES USER INPUT
# Sequence: 20=Visual study of weak interaction; 3=aNCI: Averaged NCI
# analysis; 2=medium-quality grid; 1=start averaged-NCI
# (aNCI) analysis; 2=Medium quality grid, covering whole
# system, about 512000 points in total
# INTERACTIVE ONLY -- did not finish within a ~30s verification
# timeout (computing averaged
# density/gradient/Hessian) -- may just be a
# genuinely slow calculation (aNCI is an ensemble
# method), not confirmed broken
ANCI_ANALYSIS = ("20", "3", "2", "1", "2")
# INTERACTIVE - REQUIRES USER INPUT Independent Gradient Model (IGM):
# decomposes the density gradient into intra- and inter-fragment
# parts; isolates and visualises inter-fragment non-covalent
# interactions INTEACTIVE - REQUIRES USER INPUT
# Sequence: 20=Visual study of weak interaction; 10=IGM analysis
# INTERACTIVE ONLY -- requires interactively defining one or more atom
# fragments ('How many fragments...'); can't be
# filled with a fixed default
IGM_ANALYSIS = ("20", "10")
# IGM-H (Hirshfeld-based IGM): uses Hirshfeld atomic densities as the
# reference for gradient decomposition; more accurate inter-fragment
# gradient isolation than standard IGM INTERACTIVE - REQUIRES USER
# INPUT
# Sequence: 20=Visual study of weak interaction; 11=IGMH: IGM analysis
# based on Hirshfeld partition of molecular density (JCC,
# 43, 539)
# INTERACTIVE ONLY -- requires interactively defining one or more atom
# fragments ('How many fragments...'); can't be
# filled with a fixed default
IGMH_ANALYSIS = ("20", "11")
# Averaged IGM (aIGM): IGM analysis averaged over an MD trajectory
# ensemble identifies which inter-fragment interactions are persistent
# in dynamic systems INTERACTIVE - REQUIRES USER INPUT
# Sequence: 20=Visual study of weak interaction; 12=aIGM: Averaged IGM
# analysis
# INTERACTIVE ONLY -- requires interactively defining one or more atom
# fragments ('How many fragments...'); can't be
# filled with a fixed default
AIGM_ANALYSIS = ("20", "12")
# Modified IGM (mIGM): coordinate-only IGM variant that avoids the
# need for a wavefunction; nearly identical results to IGMH for weak
# interactions at orders-of-magnitude lower cost INTERACTIVE -
# REQUIRES USER INPUT
# Sequence: 20=Visual study of weak interaction; -10=mIGM: Modified
# IGM analysis
# INTERACTIVE ONLY -- requires interactively defining one or more atom
# fragments ('How many fragments...'); can't be
# filled with a fixed default
MIGM_ANALYSIS = ("20", "-10")
# Averaged mIGM (amIGM): mIGM averaged over MD snapshots; extends mIGM
# to fluctuation environments; more robust than aNCI and recommended
# for MD- based NCI studies INTERACTIVE - REQUIRES USER INPUT
# Sequence: 20=Visual study of weak interaction; -11=not a valid
# option here (redisplays the same menu; only -12/-10 exist)
AMIGM_ANALYSIS = ("20", "-11")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 21: Energy Decomposition Analysis (EDA)
# ─────────────────────────────────────────────────────────────────────────
# Simple EDA using combined fragment wavefunctions: decomposes
# interaction energy into electrostatic, Pauli exchange-repulsion,
# polarisation, and dispersion components
# Sequence: 21=Energy decomposition analysis; 1=Energy decomposition
# analysis based on molecular forcefield (EDA-FF)
EDA_FF = ("21", "1")
# Symmetry-based localisation EDA (SBL-EDA): energy partitioning
# scheme using symmetry constraints on localised fragment orbitals
# Sequence: 21=Energy decomposition analysis; 2=Shubin Liu's energy
# decomposition analysis (needs Gaussian)
# INTERACTIVE ONLY -- requires the path to a separate external file
# (not the primary wavefunction) -- e.g. a
# Gaussian/ORCA output, a cube file, or an NBO
# file
EDA_SBL = ("21", "2")
# Second-Order Bond Energy Analysis (SOBEDA): decomposes pairwise bond
# energies into individual occupied-MO contributions via second-order
# perturbation theory
# Sequence: 21=Energy decomposition analysis; 3=sobEDA and sobEDAw
# energy decomposition analyses
SOBEDA_ANALYSIS = ("21", "3")
# Compute per-atom contributions to the DFT-D3 or D4 empirical
# dispersion correction energy; identifies which atoms drive van der
# Waals attraction most strongly
# Sequence: 21=Energy decomposition analysis; 4=Analysis of atomic
# contribution to dispersion energy
DISPERSION_ATOMIC_CONTRIBUTION = ("21", "4")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 22: Conceptual DFT (CDFT)
# ─────────────────────────────────────────────────────────────────────────
# Chemical reactivity descriptors derived from DFT response theory.
# Launch the CDFT module: compute global reactivity indices including
# chemical potential mu, chemical hardness eta, softness S, and
# electrophilicity index omega
# Sequence: 22=Conceptual DFT (CDFT) analysis
CDFT_ANALYSIS = ("22",)
# Condense Fukui functions to atomic values using Mulliken, Hirshfeld,
# Becke, or AIM partitioning; tabulates f+, f-, and f0 for each atom
# Sequence: 22=Conceptual DFT (CDFT) analysis; 3=Calculate grid data
# of Fukui function, dual descriptor and related functions
# INTERACTIVE ONLY -- requires a second wavefunction file (e.g. the
# N+1/N-1 electron state for CDFT) beyond the
# primary input
CONDENSED_FUKUI = ("22", "3")
# Compute local hardness eta(r) from the local chemical potential;
# complements the dual descriptor for predicting hard-soft reactivity
# site preferences
# Sequence: 22=Conceptual DFT (CDFT) analysis; 4=Set delta in
# orbital-weighted (OW) calculation, current: 0.1000 a.u.
LOCAL_HARDNESS = ("22", "4")
# Compute orbital weights as a reactivity map; low-weight regions
# indicate preferred electrophilic attack sites
# Sequence: 22=Conceptual DFT (CDFT) analysis; 5=Print current orbital
# weights used in orbital-weighted (OW) calculation
ORBITAL_WEIGHTS = ("22", "5")
# Sequence: 22=Conceptual DFT (CDFT) analysis; 6=Calculate condensed
# OW Fukui function and OW dual descriptor
ORBITAL_WEIGHTED_FUKUI = ("22", "6")
# Sequence: 22=Conceptual DFT (CDFT) analysis; 7=Calculate grid data
# of OW Fukui function and OW dual descriptor; 2=Medium
# quality grid, covering whole system, about 512000 points
# in total; 5=Export grid data of orbital-weighted f+ as
# OW_f+.cub; 6=export grid data of orbital-weighted f- as
# OW_f-.cub; 7=export grid data of orbital-weighted f0 as
# OW_f0.cub; 8=Export grid data of orbital-weighted dual
# descriptor as OW_DD.cub
GRID_FUKUI = ("22", "7", "2", "5", "6", "7", "8")
# Sequence: 22=Conceptual DFT (CDFT) analysis; 8=Calculate
# nucleophilic and electrophilic superdelocalizabilities
SUPERDELOCALIZABILITIES_NUC_E = ("22", "8")
# Generate .wfn files for the N, N+1, and N-1 electron states via
# Gaussian single-point calculations; prerequisite for condensed Fukui
# functions and CDFT indices that need multiple charge states
# Sequence: 22=Conceptual DFT (CDFT) analysis; 1=Generate .wfn files
# for N, N+1, N-1 electrons states
# INTERACTIVE ONLY -- requires a local Gaussian installation to be
# found on PATH
CDFT_GENERATE_CHARGED_WFN = ("22", "1")
# Calculate grid data of the Fukui potential and dual-descriptor
# potential (electrostatic-potential analogues of the Fukui function)
# Sequence: 22=Conceptual DFT (CDFT) analysis; 9=Calculate grid data
# of Fukui potential and dual descriptor potential
# INTERACTIVE ONLY -- requires a second wavefunction file (e.g. the
# N+1/N-1 electron state for CDFT) beyond the
# primary input
CDFT_GRID_FUKUI_POTENTIAL = ("22", "9")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 23: ETS-NOCV
# ─────────────────────────────────────────────────────────────────────────
# Extended Transition State combined with Natural Orbitals for
# Chemical Valence: energy-decomposed orbital interaction analysis.
# ETS-NOCV: diagonalise the deformation density matrix to obtain NOCV
# pairs; decompose the orbital interaction energy Delta_E_orb into
# individual pairwise NOCV channel contributions; useful for
# characterising sigma, pi, and delta bond formation
# Sequence: 23=ETS-NOCV analysis
# INTERACTIVE ONLY -- requires interactively defining one or more atom
# fragments ('How many fragments...'); can't be
# filled with a fixed default
ETS_NOCV_ANALYSIS = ("23",)
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 24: Polarizability
# ─────────────────────────────────────────────────────────────────────────
# INTERACTIVE Parse and print polarizability (alpha) and
# hyperpolarizability (beta, gamma) tensors from a Gaussian frequency
# or finite-field task output file
# Sequence: 24=(Hyper)polarizability analysis; 1=Parse output file of
# (hyper)polarizability task of Gaussian and calculate
# various related quantities
PARSE_POLARIZABILITY = ("24", "1")
# Compute (hyper)polarizability via the Sum-Over-States (SOS) method
# from TD-DFT excited-state data; useful when a direct field-
# perturbation calculation is impractical
# Sequence: 24=(Hyper)polarizability analysis; 2=Study
# (hyper)polarizability by sum-over-states (SOS) method and
# perform two/three-level analysis
SOS_POLARIZABILITY = ("24", "2")
# Compute and visualise the polarizability density p(r): the spatial
# distribution of where molecular polarisability originates in real
# space
# Sequence: 24=(Hyper)polarizability analysis; 3=(hyper)polarizability
# density analysis
POLARIZABILITY_DENSITY = ("24", "3")
# Project the polarizability tensor onto a unit sphere to produce a 3D
# directional surface showing polarisability anisotropy
# Sequence: 24=(Hyper)polarizability analysis; 5=Visualize
# (hyper)polarizability via unit sphere and vector
# representations
UNIT_SPHERE_POLARIZABILITY = ("24", "5")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 25: Aromaticity
# ─────────────────────────────────────────────────────────────────────────
# Magnetic, geometric, and electronic indices for aromaticity
# assessment. Anisotropy of the Induced Current Density: compute the
# magnetically induced ring-current density and export as a 3D
# isosurface; diatropic current = aromatic
# Sequence: 25=Electron delocalization and aromaticity analyses;
# 1=Multicenter bond order
# INTERACTIVE ONLY -- requires an interactively-specified atom or ring
# index list (e.g. 'Input index of the atoms in
# ring order')
AICD_ANALYSIS = ("25", "1")
# Compute Nucleus-Independent Chemical Shift (NICS) at a single user-
# specified point; negative NICS = diatropic / aromatic, positive =
# paratropic / antiaromatic
# Sequence: 25=Electron delocalization and aromaticity analyses;
# 2=AV1245 index
# INTERACTIVE ONLY -- requires an interactively-specified atom or ring
# index list (e.g. 'Input index of the atoms in
# ring order')
NICS_POINT = ("25", "2")
# Iso-Chemical Shielding Surface (ICSS): compute NMR shielding on a 3D
# grid and generate isosurfaces to visualise the spatial extent and
# shape of ring-current shielding cones
# Sequence: 25=Electron delocalization and aromaticity analyses;
# 3=Iso-chemical shielding surface (ICSS)
ICSS_ANALYSIS = ("25", "3")
# NICS scan along a user-defined path perpendicular to a ring plane;
# plots the NICS(z) profile to show how aromaticity decays with
# distance from the ring
# Sequence: 25=Electron delocalization and aromaticity analyses;
# 4=NICS_ZZ for non-planar or tilted system
# INTERACTIVE ONLY -- requires an interactively-specified coordinate
# (e.g. a NICS ring center)
NICS_SCAN = ("25", "4")
# Bird aromaticity index (I5 for 5-membered, I6 for 6-membered rings):
# geometry-based index from bond-length uniformity; 100 = fully
# aromatic reference
# Sequence: 25=Electron delocalization and aromaticity analyses;
# 5=ELF-sigma/pi and LOL-sigma/pi
# INTERACTIVE ONLY -- in this Multiwfn 3.8(dev) build, option 5 under
# Main Menu 25 is actually 'ELF-sigma/pi and LOL-
# sigma/pi' (a pointer to other modules, not a
# standalone calculation) -- the menu has been
# reorganized since this entry was written; Bird
# aromaticity index is now reached via option 6
# (combined with HOMA), which itself requires an
# interactively-specified atom or ring index list
# (e.g. 'Input index of the atoms in ring order')
# (ring)
BIRD_INDEX = ("25", "5")
# Harmonic Oscillator Model of Aromaticity: geometry-based index; 1 =
# fully aromatic, 0 = nonaromatic, negative values indicate
# antiaromaticity
# Sequence: 25=Electron delocalization and aromaticity analyses;
# 6=Harmonic oscillator measure of aromaticity (HOMA) and
# Bird indices
# INTERACTIVE ONLY -- reaches the real 'HOMA / Bird aromaticity index'
# submenu (option 6) but requires an
# interactively-specified atom or ring index list
# (e.g. 'Input index of the atoms in ring order')
# (ring) to actually run the calculation ('Input
# indices of the atoms according to bonding
# relationship in the ring')
HOMA_INDEX = ("25", "6")
# HOMAC (corrected HOMA) and HOMER aromaticity indices; improved
# geometric models that account for updated bond-length reference
# values from crystal data
# Sequence: 25=Electron delocalization and aromaticity analyses;
# 7=Shannon aromaticity index
# INTERACTIVE ONLY -- in this Multiwfn 3.8(dev) build, option 7 under
# Main Menu 25 is actually 'Shannon aromaticity
# index' (a pointer to the topology analysis
# module, main function 2) -- HOMAc/HOMER are sub-
# variants '6a'/'6b' of option 6 (HOMA), not
# reachable as a separate top-level entry, and
# themselves requires an interactively-specified
# atom or ring index list (e.g. 'Input index of
# the atoms in ring order') (ring)
HOMAC_HOMER = ("25", "7")
# Stanger EN geometric aromaticity index: separates bond-length
# alternation (EN_GEO) from uniform bond-length deviation (EN_BLA) for
# a cleaner aromaticity measure
# Sequence: 25=Electron delocalization and aromaticity analyses;
# 8=Para-delocalization index (PDI)
# INTERACTIVE ONLY -- in this Multiwfn 3.8(dev) build, option 8 under
# Main Menu 25 is actually 'Para-delocalization
# index (PDI)' (a pointer to the fuzzy atomic
# space module, main function 15) -- no separate
# Stanger EN aromaticity index option exists at
# this position in this build
STANGER_INDEX = ("25", "8")
# Automated 1-D NICS scan perpendicular to a ring: places ghost atoms
# at incremental heights, runs Gaussian, reads back shielding tensors,
# and plots the NICS(z) curve
# Sequence: 25=Electron delocalization and aromaticity analyses;
# 13=NICS-1D scan curve map, integral NICS (INICS) and
# FiPC-NICS
NICS_1D_SCAN = ("25", "13")
# Automated 2D NICS shielding map in or perpendicular to the ring
# plane; produces a colour-filled map to spatially visualise the
# magnetic ring- current delocalization
# Sequence: 25=Electron delocalization and aromaticity analyses;
# 14=NICS-2D scan plane map
NICS_2D_MAP = ("25", "14")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 100: Utilities Part 1
# ─────────────────────────────────────────────────────────────────────────
# INTERACTIVE Plot a 2D scatter graph of two real-space functions
# evaluated on the same grid and export both as .cube files; classic
# use is RDG vs. sign(lambda2)*rho for the NCI scatter plot
# Sequence: 100=Other functions (Part 1); 1=Draw scatter graph between
# two functions and generate their cube files
SCATTER_GRAPH_TWO_FUNCTIONS = ("100", "1")
# Export the loaded wavefunction or geometry to .pdb, .xyz, .wfn,
# .molden, .fch, Gaussian input, GAMESS input, or CP2K input format
# Sequence: 100=Other functions (Part 1); 2=Export various files
# (mwfn/pdb/xyz/wfn/wfx/molden/fch/47/mkl...) or generate
# input file of quantum chemistry programs
EXPORT_VARIOUS_FILES = ("100", "2")
# Calculate the molecular van der Waals volume as the space enclosed
# within the rho = 0.001 a.u. electron-density isosurface
# Sequence: 100=Other functions (Part 1); 3=Calculate molecular van der
# Waals volume; 9,0.001,1.7=Monte Carlo grid density (i),
# isovalue (x), vdW radius scale factor (k) -- Multiwfn's
# own suggested default for small molecules; 0,0,0=return
# from the volume sub-prompt; 0=return from the "Other
# functions" submenu to the main menu
# FIXED - ("100", "3") alone only opens the "Please input i,x,k"
# sub-prompt and leaves it waiting for interactive input, so the
# calculation never actually runs. Verified against the real binary:
# the trailing "0,0,0" alone returns to the "Other functions"
# submenu listing, which still needs its own "0" to reach the main
# menu before quitting.
VDW_VOLUME = ("100", "3", "9,0.001,1.7", "0,0,0", "0")
# Numerically integrate a chosen real-space function over all space
# using Becke multi-centre quadrature; used to verify total electron
# count (integral of rho = N)
# Sequence: 100=Other functions (Part 1); 4=Integrate a function in
# whole space
INTEGRATE_WHOLE_SPACE = ("100", "4")
# Compute the spatial overlap integral <psi_i_alpha | psi_j_beta>
# between each alpha-beta orbital pair; measures how well alpha and
# beta orbitals correspond spatially in UHF/UKS
# Sequence: 100=Other functions (Part 1); 5=Show overlap integral
# between alpha and beta orbitals
# INTERACTIVE ONLY -- requires an unrestricted (open-shell, UHF/UKS)
# wavefunction (Multiwfn: 'This function is only
# available for unrestricted wavefunction!');
# fails on closed-shell/restricted systems such as
# the bundled test molecule
ORBITAL_OVERLAP_INTEGRAL = ("100", "5")
# Parse a Gaussian output file and plot the SCF energy and DIIS error
# convergence as a function of iteration number
# Sequence: 100=Other functions (Part 1); 6=Monitor SCF convergence
# process of Gaussian
# INTERACTIVE ONLY -- expects a Gaussian SCF output log file named
# exactly 'gauout.out' to already exist in the
# working directory (Multiwfn reads it directly
# via Fortran unit 10 with no path prompt; crashes
# with 'end-of-file during read' when absent)
MONITOR_SCF_CONVERGENCE = ("100", "6")
# Generate a Gaussian input file that uses the already-converged MO
# coefficients as initial guess; saves SCF iterations when restarting
# or changing basis
# Sequence: 100=Other functions (Part 1); 7=Auxiliary tools for CP2K
# (CP2Kmate)
GAUSSIAN_INITIAL_GUESS = ("100", "7")
# Generate a Gaussian input file whose initial MO guess is assembled
# from separately converged fragment wavefunctions; used to prepare
# CDA and EDA calculations
# Sequence: 100=Other functions (Part 1); 8=Generate Gaussian input
# file with initial guess from fragment wavefunctions
# INTERACTIVE ONLY -- requires interactively defining one or more atom
# fragments ('How many fragments...'); can't be
# filled with a fixed default
FRAGMENT_GUESS_INPUT = ("100", "8")
# Evaluate and print the coordination number for every atom using an
# empirical distance criterion scaled from vdW or covalent radii
# Sequence: 100=Other functions (Part 1); 9=Evaluate interatomic
# connectivity and atomic coordination number; =accept the
# default (press ENTER); y=yes
ATOMIC_COORDINATION = ("100", "9", "", "y")
# Calculate integral of |psi_i(r)| * |psi_j(r)| over all space;
# measures how much two orbital densities spatially overlap without
# phase cancellation
# Sequence: 100=Other functions (Part 1); 11=Calculate overlap and
# centroid distance between two orbitals
ORBITAL_OVERLAP_CENTROID = ("100", "11")
# Biorthogonalise a set of orbitals (e.g., localised MOs) and compute
# their one-electron energies from the Fock matrix without re-running
# the SCF
# Sequence: 100=Other functions (Part 1); 12=Biorthogonalization
# between alpha and beta orbitals
BIORTHOGONALIZATION = ("100", "12")
# Compute HOMA and Bird aromaticity indices for a user-specified ring
# directly from the molecular geometry coordinates
# Sequence: 100=Other functions (Part 1); 13=Process grid data (No
# grid data is presented currently)
# INTERACTIVE ONLY -- requires an interactively-specified atom or ring
# index list (e.g. 'Input index of the atoms in
# ring order') (ring)
HOMA_BIRD_AROMATICITY = ("100", "13")
# Compute the LOLIPOP index (LOL Integrated Pi Over Plane): integral
# of LOL in the pi-symmetry plane above and below the ring; quantifies
# pi-electron delocalization
# Sequence: 100=Other functions (Part 1); 14=Calculate LOLIPOP (LOL
# Integrated Pi Over Plane)
LOLIPOP_INDEX = ("100", "14")
# Calculate intermolecular orbital overlap integrals between two
# molecular species; predicts charge-transfer coupling strengths
# relevant to organic semiconductor design
# Sequence: 100=Other functions (Part 1); 15=Calculate intermolecular
# orbital overlap
INTERMOLECULAR_OVERLAP = ("100", "15")
# Construct and export the Fock matrix F = C^{-1T} * epsilon * C^{-1}
# from orbital energies and coefficients; needed for
# biorthogonalisation and ETS-NOCV
# Sequence: 100=Other functions (Part 1); 17=Generate Fock/KS matrix
# based on orbital energies and coefficients
GENERATE_FOCK_MATRIX = ("100", "17")
# Yoshizawa electron-transport route analysis: identify the dominant
# through-bond tunnelling pathway between two terminal atoms using
# squared orbital-amplitude products
# Sequence: 100=Other functions (Part 1); 18=Yoshizawa's electron
# transport route analysis
# INTERACTIVE ONLY -- requires the path to a separate external file
# (not the primary wavefunction) -- e.g. a
# Gaussian/ORCA output, a cube file, or an NBO
# file
ELECTRON_TRANSPORT_ROUTE = ("100", "18")
# Combine separately computed fragment wavefunctions at their
# molecular geometry to form a promolecular .wfn file; reference state
# for EDA and CDA
# Sequence: 100=Other functions (Part 1); 19=Generate new wavefunction
# by combining fragment wavefunctions
COMBINE_FRAGMENTS = ("100", "19")
# Compute Hellmann-Feynman electrostatic forces on each nucleus from
# the electron density distribution and all other nuclear charges
# Sequence: 100=Other functions (Part 1); 20=Calculate
# Hellmann-Feynman forces
HELLMANN_FEYNMAN_FORCES = ("100", "20")
# Print selected geometric properties: bond lengths, bond angles,
# dihedral angles, and distances for user-specified atoms
# Sequence: 100=Other functions (Part 1); 21=Calculate properties
# based on geometry information for specific atoms
GEOMETRY_PROPERTIES = ("100", "21")
# Automatically identify pi-symmetry orbitals in planar systems based
# on nodal-plane criteria and optionally zero their occupation numbers
# to isolate the sigma frame
# Sequence: 100=Other functions (Part 1); 22=Detect pi orbitals, set
# occupation numbers and calculate pi composition
DETECT_PI_ORBITALS = ("100", "22")
# Fit the distribution of a real-space function onto per-atom
# parameter values using a least-squares procedure; useful for atom-
# centred property assignments
# Sequence: 100=Other functions (Part 1); 23=Fit function distribution
# to atomic value
FIT_FUNCTION_TO_ATOMS = ("100", "23")
# Compute the out-of-plane NICS_ZZ shielding component for non-planar
# rings by projecting the full shielding tensor onto the local ring-
# normal direction
# Sequence: 100=Other functions (Part 1); 24=(Hyper)polarizability
# analysis
# INTERACTIVE ONLY -- requires an interactively-specified coordinate
# (e.g. a NICS ring center)
NICS_ZZ_NONPLANAR = ("100", "24")
# Calculate the area enclosed by and the perimeter of a ring defined
# by user-specified atom indices from the molecular geometry
# Sequence: 100=Other functions (Part 1); 25=Electron delocalization
# and aromaticity analyses
# INTERACTIVE ONLY -- requires an interactively-specified atom or ring
# index list (e.g. 'Input index of the atoms in
# ring order') (ring)
RING_AREA_PERIMETER = ("100", "25")
# Generate a CP2K periodic-DFT input file from the loaded geometry and
# cell information; enter 'cp2k' at the export-type prompt to activate
# Sequence: 100=Other functions (Part 1); 2=Export various files
# (mwfn/pdb/xyz/wfn/wfx/molden/fch/47/mkl...) or generate
# input file of quantum chemistry programs; 25=CP2K; =accept
# the default (press ENTER); 0=return to the previous menu
GENERATE_CP2K_INPUT = ("100", "2", "25", "", "0")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 200: Utilities Part 2
# ─────────────────────────────────────────────────────────────────────────
# Sequence: 200=Other functions (Part 2); 10=Output various kinds of
# integral between orbitals; 1=electric dipole moment
# integral; 3=Between all orbitals; 0=return to the main
# menu after the calculation completes
# FIXED - the trailing "0" was missing; verified against the real
# binary that the computation itself succeeds but leaves the "Other
# functions (Part 2)" submenu open, which crashes on quit without it.
ORBITAL_INTEGRAL_ELECTRIC_DIPOLE = ("200", "10", "1", "3", "0")
# Sequence: 200=Other functions (Part 2); 10=Output various kinds of
# integral between orbitals; 2=magnetic dipole moment
# integral; 3=Between all orbitals; 0=return to the main
# menu after the calculation completes
ORBITAL_INTEGRAL_MAGNETIC_DIPOLE = ("200", "10", "2", "3", "0")
# Sequence: 200=Other functions (Part 2); 10=Output various kinds of
# integral between orbitals; 3=velocity integral; 3=Between
# all orbitals; 0=return to the main menu after the
# calculation completes
ORBITAL_INTEGRAL_VELOCITY = ("200", "10", "3", "3", "0")
# Sequence: 200=Other functions (Part 2); 10=Output various kinds of
# integral between orbitals; 4=kinetic energy integral;
# 3=Between all orbitals; 0=return to the main menu after
# the calculation completes
ORBITAL_INTEGRAL_KINETIC_ENERGY = ("200", "10", "4", "3", "0")
# Sequence: 200=Other functions (Part 2); 10=Output various kinds of
# integral between orbitals; 5=overlap integral; 3=Between
# all orbitals; 0=return to the main menu after the
# calculation completes
ORBITAL_INTEGRAL_OVERLAP = ("200", "10", "5", "3", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 1=Electron
# density (rho)
SPACIAL_DELOCALISATION_EDENSITY = ("200", "19", "1", "1")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 2=Gradient norm
# of rho
SPACIAL_DELOCALISATIOn_NORM_RHO = ("200", "19", "1", "2")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 3=Laplacian of
# rho
SPATIAL_DELOCALISATION_LAPLACIAN = ("200", "19", "1", "3", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 4=Value of
# orbital wavefunction; h=select the HOMO (universal,
# molecule-independent default); 0=return to the main menu
# after the calculation completes
# FIXED - was ("200", "19", "1", "4", "0") -- the "0" was wrongly
# treated as a menu-return token, but this point actually prompts
# for an orbital index ("Input orbital index, e.g. 28" / accepts
# "h" for HOMO), so "0" was being read as orbital 0 and the
# calculation never ran. Verified against the real binary.
SPATIAL_DELOCALISATION_ORB_WFN = ("200", "19", "1", "4", "h", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 5=Electron spin
# density
SPATIAL_DELOCALISATION_ESPIN_DENSITY = ("200", "19", "1", "5", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 6=Hamiltonian
# kinetic energy density K(r)
SPATIAL_DELOCALISATION_KR = ("200", "19", "1", "6", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 7=Lagrangian
# kinetic energy density G(r)
SPATIAL_DELOCALISATION_GR = ("200", "19", "1", "7", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 8=Electrostatic
# potential from nuclear charges
SPATIAL_DELOCALISATION_ESP_CHARGES = ("200", "19", "1", "8", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 9=Electron
# localization function (ELF)
SPATIAL_DELOCALISATION_ELF = ("200", "19", "1", "9", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 10=Localized
# orbital locator (LOL)
SPATIAL_DELOCALISATION_LOL = ("200", "19", "1", "10", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 11=Local
# information entropy
SPATIAL_DELOCALISATION_LOCAL_ENTROPY = ("200", "19", "1", "11", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 12=Total
# electrostatic potential (ESP)
SPATIAL_DELOCALISATION_ESP_TOTAL = ("200", "19", "1", "12", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 13=Reduced
# density gradient (RDG)
SPATIAL_DELOCALISATION_RDG = ("200", "19", "1", "13", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 14=RDG with
# promolecular approximation
SPATIAL_DELOCALISATION_RDG_PROMOLECULAR = ("200", "19", "1", "14", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function;
# 15=Sign(lambda2)*rho
SPATIAL_DELOCALISATION_LAMBDA2RHO = ("200", "19", "1", "15", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function;
# 16=Sign(lambda2)*rho with promolecular approximation
SPATIAL_DELOCALISATION_LAMBDA2RHO_PROMOLECULAR = ("200", "19", "1", "16", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 18=Average
# local ionization energy (ALIE)
SPATIAL_DELOCALISATION_ALIE = ("200", "19", "1", "18", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 20=Electron
# delocal. range func. EDR(r;d)
SPATIAL_DELOCALISATION_EDR = ("200", "19", "1", "20", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 21=Orbital
# overlap dist. func. D(r)
SPATIAL_DELOCALISATION_ORB_OVERLAP_DR = ("200", "19", "1", "21", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 22=Delta-g
# (promolecular approximation)
SPATIAL_DELOCALISATION_DELTAG_PROMOLECULAR = ("200", "19", "1", "22", "0")
# Sequence: 200=Other functions (Part 2) (leading spaces in the
# token are stray but harmless); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 23=Delta-g
# (Hirshfeld partition)
SPATIAL_DELOCALISATION_DELTAG_HIRSHFELD = ("200", "19", "1", "23", "0")
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function;
# 1=Calcluate SDI for a real space function; 24=Interaction
# region indicator (IRI)
SPATIAL_DELOCALISATION_IRI = ("200", "19", "1", "24", "0")
# Fluctuation NCI (aRDG): RDG-based weak-interaction analysis time-
# averaged over an MD trajectory; reveals which non-covalent contacts
# persist throughout the simulation
# Sequence: 200=Other functions (Part 2); 1=Calculate core-valence
# bifurcation (CVB) index and related quantities
CVB_INDEX = ("200", "1")
# Compute atomic and bond dipole moments in Hilbert space using
# Mulliken partitioning; decomposes the total molecular dipole into
# atomic and inter-atomic bond contributions
# Sequence: 200=Other functions (Part 2); 2=Calculate atomic and bond
# dipole moments in Hilbert space
ATOMIC_BOND_DIPOLES = ("200", "2")
# Generate Gaussian .cube files for multiple orbitals in a single
# automated run; each selected orbital wavefunction is exported as a
# separate file
# Sequence: 200=Other functions (Part 2); 3=Generate cube file for
# multiple orbital wavefunctions; 0=return to the previous
# menu
MULTIPLE_ORBITAL_CUBES = ("200", "3", "0")
# Generate 3D NMR shielding (ICSS) data as .cube files; visualise
# magnetically induced ring-current effects as shielding isosurfaces
# in VMD
# Sequence: 200=Other functions (Part 2); 4=Output and plot specific
# property in a plane
ICSS_CUBES = ("200", "4")
# Compute and plot the spherical radial distribution function RDF(r) =
# 4*pi*r^2 * f(r) of a chosen real-space function; useful for
# spherically symmetric systems such as fullerenes or atoms
# Sequence: 200=Other functions (Part 2); 5=Plot radial distribution
# function for a real space function
RADIAL_DISTRIBUTION = ("200", "5")
# Analyse the overlap correspondence between orbitals in two different
# wavefunctions; tracks how orbitals evolve along a reaction path or
# change between two levels of theory
# Sequence: 200=Other functions (Part 2); 6=Analyze correspondence
# between orbitals in two wavefunctions
ORBITAL_CORRESPONDENCE = ("200", "6")
# Parse and tabulate polarizability (alpha) and first/second/third
# hyperpolarizability (beta, gamma, delta) tensors from a Gaussian
# polar- keyword output file
# Sequence: 200=Other functions (Part 2); 7=Population analysis and
# calculation of atomic charges
PARSE_POLARIZABILITY_GAUSSIAN = ("200", "7")
# Compute polarizability and 1st/2nd/3rd hyperpolarizabilities by the
# Sum- Over-States (SOS) method using TD-DFT excited-state energies
# and transition moments
# Sequence: 200=Other functions (Part 2); 8=Orbital composition
# analysis
SOS_HYPERPOLARIZABILITY = ("200", "8")
# Calculate and print average bond lengths and average coordination
# numbers for all element-type combinations in the molecule
# Sequence: 200=Other functions (Part 2); 9=Calculate average bond
# length and average coordinate number
AVERAGE_BOND_LENGTH = ("200", "9")
# Compute one-electron integrals between pairs of orbitals: kinetic
# energy <i|T|j>, nuclear attraction <i|V|j>, Coulomb, and exchange
# integrals
# Sequence: 200=Other functions (Part 2); 10=Output various kinds of
# integral between orbitals
ORBITAL_INTEGRALS = ("200", "10")
# Compute the centroid (first moment), second moments, and radius of
# gyration of a chosen real-space function; characterises its spatial
# spread and shape
# Sequence: 200=Other functions (Part 2); 11=Calculate center,
# first/second moments and radius of gyration of a function
FUNCTION_MOMENTS = ("200", "11")
# Compute the Energy Index (EI) and Bond Polarity Index (BPI) from
# kinetic and potential energy densities evaluated at bond critical
# points
# Sequence: 200=Other functions (Part 2); 12=Calculate energy index
# (EI) or bond polarity index (BPI)
ENERGY_INDEX = ("200", "12")
# Decompose a grid-based property (e.g., electron density) into
# contributions from individual MOs and export per-orbital .cube files
# for detailed analysis
# Sequence: 200=Other functions (Part 2); 13=Evaluate orbital
# contributions to density difference or other grid data
# INTERACTIVE ONLY -- requires the path to a separate external file
# (not the primary wavefunction) -- e.g. a
# Gaussian/ORCA output, a cube file, or an NBO
# file
ORBITAL_CONTRIBUTIONS_TO_GRID = ("200", "13")
# Identify and characterise topologically connected electron-density
# domains: contiguous regions above a chosen isovalue threshold in the
# 3D grid
# Sequence: 200=Other functions (Part 2); 14=Domain analysis
# (Obtaining properties within isosurfaces of a function)
DOMAIN_ANALYSIS = ("200", "14")
# Compute a spatial correlation index between two real-space functions
# evaluated on the same grid; quantifies how similarly their
# distributions are arranged in space
# Sequence: 200=Other functions (Part 2); 15=Calculate electron
# correlation index (PCCP, 18, 24015)
CORRELATION_INDEX = ("200", "15")
# Diagonalise the one-particle density matrix to obtain natural
# orbitals (NOs) and their occupation numbers; useful for
# characterising electron correlation and multi-reference character
# Sequence: 200=Other functions (Part 2); 16=Generate natural orbitals
# based on the density matrix in .fch/.fchk file
NATURAL_ORBITALS = ("200", "16")
# Evaluate two-electron Coulomb (J_ij) and exchange (K_ij) integrals
# between all pairs of molecular orbitals; provides input for EDA,
# perturbation theory, and excited-state analysis
# Sequence: 200=Other functions (Part 2); 17=Calculate Coulomb and
# exchange integrals between two orbitals
COULOMB_EXCHANGE_INTEGRALS = ("200", "17")
# Compute Bond Length Alternation (BLA) and Bond Order Alternation
# (BOA) along a user-defined conjugated chain; quantifies the degree
# of alternation in polyene or polyacetylene-type pi systems
# Sequence: 200=Other functions (Part 2); 18=Calculate bond
# length/order alternation (BLA/BOA)
BLA_BOA_ANALYSIS = ("200", "18")
# Compute the spatial delocalization index (SDI): measures how broadly
# the electron density is spread across space; indicator of overall
# delocalisation
# Sequence: 200=Other functions (Part 2); 19=Calculate spatial
# delocalization index (SDI) for orbitals or a function
SPATIAL_DELOCALIZATION_INDEX = ("200", "19")
# Bond Order Decomposition (BOD) and Natural Atomic Dipole Orbital
# (NADO) analysis: decomposes Mayer bond orders and atomic dipole
# moments into natural orbital pair contributions
# Sequence: 200=Other functions (Part 2); 20=Bond order density (BOD)
# and natural adaptive orbital (NAdO) analyses
BOD_NADO_ANALYSIS = ("200", "20")
# Perform Lowdin symmetric orthogonalization of the current orbital
# set and optionally evaluate the resulting orbital energies directly
# from the Fock matrix
# Sequence: 200=Other functions (Part 2); 21=Perform Lowdin
# orthogonalization between occupied orbitals
LOWDIN_ORTHOGONALIZATION = ("200", "21")
# ─────────────────────────────────────────────────────────────────────────
# Main Menu 300: Utilities Part 3
# ─────────────────────────────────────────────────────────────────────────
# Calculate the free void volume in a periodic unit cell not occupied
# by atomic vdW spheres; relevant for porosity characterisation in
# MOFs, zeolites, and porous organic cages
# Sequence: 300=Other functions (Part 3); 1=Viewing free regions and
# calculating free volume in a cell
FREE_VOLUME_IN_CELL = ("300", "1")
# Fit the spherically averaged radial electron density of each atom in
# the molecule to a set of Slater-type or Gaussian-type radial
# functions; generates transferable atomic density parameters
# Sequence: 300=Other functions (Part 3); 2=Fitting atomic radial
# density as linear combination of multiple STOs or GTFs
FIT_ATOMIC_RADIAL_DENSITY = ("300", "2")
# Simulate a Scanning Tunnelling Microscopy (STM) image using the
# Tersoff- Hamann approximation from the local density of states near
# the Fermi energy
# Sequence: 300=Other functions (Part 3); 4=Simulating scanning
# tunneling microscope (STM) image
STM_IMAGE = ("300", "4")
# Compute and print the molecular electric multipole moment tensor up
# to hexadecapole order from the electron density and nuclear charges
# Sequence: 300=Other functions (Part 3); 5=Calculate electric
# dipole/multipole moments and electronic spatial extent
ELECTRIC_MULTIPOLE_MOMENTS = ("300", "5")
# Evaluate orbital energies epsilon_i = <psi_i|F|psi_i> directly from
# the Fock matrix without running a new SCF; particularly useful after
# orbital localisation or biorthogonalisation
# Sequence: 300=Other functions (Part 3); 6=Calculate energies of
# present orbitals by inputting Fock matrix
# INTERACTIVE ONLY -- requires the path to a separate external file
# (not the primary wavefunction) -- e.g. a
# Gaussian/ORCA output, a cube file, or an NBO
# file
ORBITAL_ENERGIES_FROM_FOCK = ("300", "6")
# Perform geometric transformations on the molecular structure:
# translate, rotate, reflect, invert, or generate symmetry-equivalent
# atoms
# Sequence: 300=Other functions (Part 3); 7=Geometry operation on the
# present system
GEOMETRY_OPERATIONS = ("300", "7")
# Generate a molecular surface distance projection map plotting d_i
# (distance to nearest internal atom) vs. d_e (distance to nearest
# external atom) for every surface point; reveals steric
# complementarity and packing motifs
# Sequence: 300=Other functions (Part 3); 8=Plot surface distance
# projection map; 0=return to the previous menu; -2=Export
# plane data as distmap.txt in current folder; 1=Save the
# map as graphical file in current folder; -1=Return
SURFACE_DISTANCE_PROJECTION = ("300", "8", "0", "-2", "1", "-1")
# Determine the Fermi energy level from the orbital energy
# distribution and occupation numbers; particularly useful for
# periodic or large cluster systems
# Sequence: 300=Other functions (Part 3); 9=Determine Fermi level
DETERMINE_FERMI_LEVEL = ("300", "9")
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